A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.5
nTPM
Monaco:
28.6
nTPM
Schmiedel:
113.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.5
HPA sample
nTPM
Memory B-cell nTPM: 1.5
Samples: 6
Max nTPM: 3.6
Min nTPM: 0.7
P10809_1017
0.7
P10809_1025
1.4
P10809_1044
0.7
P10809_1063
3.6
P10809_1092
1.0
P10809_1105
1.7
Naive B-cell nTPM: 1.4
Samples: 6
Max nTPM: 3.0
Min nTPM: 0.2
P10809_1011
3.0
P10809_1029
1.0
P10809_1048
0.2
P10809_1067
1.4
P10809_1091
1.5
P10809_1104
1.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 21.8
Samples: 4
Max nTPM: 29.8
Min nTPM: 12.5
RHH5310_R3677
19.3
RHH5218_R3590
25.5
RHH5247_R3619
12.5
RHH5276_R3648
29.8
Naive B-cell nTPM: 19.2
Samples: 4
Max nTPM: 24.8
Min nTPM: 15.5
RHH5308_R3675
24.8
RHH5216_R3588
15.5
RHH5245_R3617
17.7
RHH5274_R3646
18.9
Non-switched memory B-cell nTPM: 24.7
Samples: 4
Max nTPM: 32.3
Min nTPM: 11.0
RHH5309_R3676
11.0
RHH5217_R3589
28.7
RHH5246_R3618
26.7
RHH5275_R3647
32.3
Plasmablast nTPM: 28.5
Samples: 4
Max nTPM: 29.7
Min nTPM: 26.9
RHH5312_R3679
29.7
RHH5220_R3592
29.1
RHH5249_R3621
26.9
RHH5278_R3650
28.5
Switched memory B-cell nTPM: 24.2
Samples: 4
Max nTPM: 30.3
Min nTPM: 18.3
RHH5311_R3678
29.6
RHH5219_R3591
18.6
RHH5248_R3620
18.3
RHH5277_R3649
30.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.1
Schmiedel sample id
TPM
Naive B-cell TPM: 113.1
Samples: 91
Max TPM: 144.2
Min TPM: 62.7
B_CELL_NAIVE_1
144.2
B_CELL_NAIVE_2
140.3
B_CELL_NAIVE_3
139.5
B_CELL_NAIVE_4
136.9
B_CELL_NAIVE_5
131.1
B_CELL_NAIVE_6
129.8
B_CELL_NAIVE_7
126.8
B_CELL_NAIVE_8
126.7
B_CELL_NAIVE_9
124.6
B_CELL_NAIVE_10
124.5
B_CELL_NAIVE_11
124.0
B_CELL_NAIVE_12
122.8
B_CELL_NAIVE_13
122.8
B_CELL_NAIVE_14
122.6
B_CELL_NAIVE_15
121.6
B_CELL_NAIVE_16
121.5
B_CELL_NAIVE_17
120.9
B_CELL_NAIVE_18
120.9
B_CELL_NAIVE_19
120.8
B_CELL_NAIVE_20
120.2
B_CELL_NAIVE_21
120.1
B_CELL_NAIVE_22
119.7
B_CELL_NAIVE_23
119.3
B_CELL_NAIVE_24
119.3
B_CELL_NAIVE_25
119.1
B_CELL_NAIVE_26
118.8
B_CELL_NAIVE_27
118.6
B_CELL_NAIVE_28
118.0
B_CELL_NAIVE_29
117.8
B_CELL_NAIVE_30
117.5
B_CELL_NAIVE_31
117.2
B_CELL_NAIVE_32
117.1
B_CELL_NAIVE_33
117.0
B_CELL_NAIVE_34
116.5
B_CELL_NAIVE_35
116.5
B_CELL_NAIVE_36
116.4
B_CELL_NAIVE_37
116.3
B_CELL_NAIVE_38
116.2
B_CELL_NAIVE_39
116.1
B_CELL_NAIVE_40
116.1
B_CELL_NAIVE_41
115.4
B_CELL_NAIVE_42
115.4
B_CELL_NAIVE_43
115.4
B_CELL_NAIVE_44
114.8
B_CELL_NAIVE_45
114.5
B_CELL_NAIVE_46
114.3
B_CELL_NAIVE_47
114.1
B_CELL_NAIVE_48
114.0
B_CELL_NAIVE_49
113.7
B_CELL_NAIVE_50
113.6
B_CELL_NAIVE_51
113.1
B_CELL_NAIVE_52
112.6
B_CELL_NAIVE_53
112.4
B_CELL_NAIVE_54
111.6
B_CELL_NAIVE_55
111.5
B_CELL_NAIVE_56
111.2
B_CELL_NAIVE_57
110.9
B_CELL_NAIVE_58
110.6
B_CELL_NAIVE_59
110.6
B_CELL_NAIVE_60
110.3
B_CELL_NAIVE_61
110.0
B_CELL_NAIVE_62
109.8
B_CELL_NAIVE_63
109.3
B_CELL_NAIVE_64
108.9
B_CELL_NAIVE_65
108.8
B_CELL_NAIVE_66
108.8
B_CELL_NAIVE_67
108.2
B_CELL_NAIVE_68
108.1
B_CELL_NAIVE_69
107.6
B_CELL_NAIVE_70
107.2
B_CELL_NAIVE_71
107.1
B_CELL_NAIVE_72
106.8
B_CELL_NAIVE_73
106.1
B_CELL_NAIVE_74
106.1
B_CELL_NAIVE_75
105.8
B_CELL_NAIVE_76
105.8
B_CELL_NAIVE_77
105.4
B_CELL_NAIVE_78
104.7
B_CELL_NAIVE_79
104.2
B_CELL_NAIVE_80
103.0
B_CELL_NAIVE_81
100.5
B_CELL_NAIVE_82
100.3
B_CELL_NAIVE_83
99.6
B_CELL_NAIVE_84
93.7
B_CELL_NAIVE_85
93.6
B_CELL_NAIVE_86
92.1
B_CELL_NAIVE_87
90.3
B_CELL_NAIVE_88
87.5
B_CELL_NAIVE_89
86.7
B_CELL_NAIVE_90
86.0
B_CELL_NAIVE_91
62.7
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
