MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3852.4 nTPM
HPA Brain:459.8 nTPM
GTEx:3852.4 nTPM
FANTOM5:385.4 Scaled Tags Per Million
Pig:5.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 459.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 319.9
1870 Female, age 42, unknown 438.6
2219 Male, age 76, both hemispheres 400.7
2666 Male, age 74, left hemisphere 399.7
2586 Male, age 75, left hemisphere 372.1
1833 Male, age 53, unknown 338.7
2828 Female, age 72, unknown 298.4
1830 Male, age 51, unknown 262.3
2411 Female, age 72, unknown 262.3
1827 Male, age 72, unknown 220.4
2019 Male, age 18, unknown 205.8
Dorsal raphe nucleus
nTPM: 296.3
2016 Female, age 72, unknown 341.2
2750 Male, age 76, both hemispheres 312.1
1828 Male, age 53, unknown 299.6
2298 Female, age 72, unknown 286.6
2047 Male, age 72, unknown 241.9
Inferior colliculus
nTPM: 339.3
2849 Male, age 72, unknown 442.5
1890 Male, age 53, unknown 385.3
2097 Female, age 72, unknown 267.0
1848 Female, age 42, unknown 262.4
Median raphe nucleus
nTPM: 378.2
2220 Male, age 76, midline 378.2
Periaquaductal grey, anterior
nTPM: 296.0
2502 Female, age 75, unknown 347.7
1795 Male, age 51, unknown 293.6
1947 Male, age 18, unknown 246.7
Periaquaductal grey, dorsal
nTPM: 352.7
2850 Male, age 76, both hemispheres 493.6
1840 Male, age 53, unknown 351.3
1831 Male, age 72, unknown 318.0
2464 Female, age 72, unknown 248.0
Periaquaductal grey, lateral
nTPM: 280.4
2140 Male, age 76, both hemispheres 340.1
2053 Male, age 18, unknown 326.1
2272 Male, age 74, both hemispheres 175.0
Pretectal area
nTPM: 276.3
2825 Male, age 18, unknown 336.9
2224 Female, age 72, unknown 311.8
2407 Male, age 75, both hemispheres 304.1
2667 Female, age 75, unknown 303.7
1815 Male, age 53, unknown 296.6
2316 Male, age 76, right hemisphere 287.1
1817 Female, age 42, unknown 283.7
1816 Male, age 51, unknown 268.2
1944 Female, age 72, unknown 257.1
2007 Male, age 72, unknown 223.2
2273 Male, age 74, both hemispheres 166.9
Red nucleus
nTPM: 379.3
1865 Male, age 51, unknown 494.8
2503 Female, age 72, unknown 481.4
1904 Male, age 53, unknown 442.7
2725 Female, age 75, unknown 419.7
2769 Male, age 72, unknown 392.7
2227 Male, age 72, unknown 380.0
1821 Female, age 72, unknown 357.8
1954 Female, age 42, unknown 339.1
2823 Male, age 76, right hemisphere 324.7
2584 Male, age 75, left hemisphere 322.7
2785 Male, age 18, unknown 320.5
2588 Male, age 74, left hemisphere 275.5
Substantia nigra
nTPM: 459.8
2699 Male, age 18, unknown 829.9
2409 Female, age 72, unknown 639.0
2241 Male, age 72, unknown 583.9
1851 Male, age 51, unknown 497.8
2665 Male, age 74, both hemispheres 476.7
1916 Female, age 42, unknown 439.5
1889 Female, age 72, unknown 343.1
2590 Female, age 75, unknown 279.6
2583 Male, age 75, right hemisphere 256.7
1941 Male, age 53, unknown 251.5
Superior colliculus
nTPM: 324.4
1913 Female, age 42, unknown 435.8
2587 Male, age 74, left hemisphere 385.6
1995 Male, age 72, unknown 364.9
1796 Male, age 53, unknown 356.5
2668 Female, age 75, unknown 326.6
1895 Male, age 76, right hemisphere 326.5
2664 Male, age 75, both hemispheres 297.0
1839 Male, age 51, unknown 284.8
2087 Female, age 72, unknown 238.9
2261 Male, age 18, unknown 227.2
Ventral tegmental area
nTPM: 385.9
1915 Female, age 42, unknown 520.5
2223 Female, age 72, unknown 426.5
2218 Male, age 76, both hemispheres 374.8
2021 Male, age 53, unknown 335.4
1942 Male, age 51, unknown 329.5
2410 Female, age 72, unknown 328.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3852.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3852.4
Samples: 183

Max nTPM: 11377.2
Min nTPM: 823.6
Std nTPM: 1721.6
Median nTPM: 3485.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 11377.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 9468.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 9004.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 8750.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 8267.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 7753.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 7752.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 7618.8
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 7391.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 7331.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 7006.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 385.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 385.4
FF:10158-103A5 76 years, female 385.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 5.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.0
Samples: 4

Max nTPM: 7.6
Min nTPM: 0.4
Sample A Female 1.1
Sample B Female 2.7
Sample C Male 7.6
Sample D Male 0.4
Midbrain
nTPM: 5.1
Samples: 4

Max nTPM: 13.8
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 13.8
Sample C Male 3.1
Sample D Male 3.4
Periaqueductal gray
nTPM: 4.2
Samples: 3

Max nTPM: 5.5
Min nTPM: 2.7
Sample B Female 5.5
Sample C Male 2.7
Sample D Male 4.5
Superior colliculi
nTPM: 3.5
Samples: 4

Max nTPM: 5.5
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 4.2
Sample C Male 5.5
Sample D Male 2.4

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