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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

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  • CELL LINE

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  • EVOLUTION

  • RPS27
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN72 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX
FRONTAL CORTEX FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS
MIDDLE TEMPORAL GYRUS MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX
SEPTAL AREA SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:461.1 nTPM
GTEx:3852.4 nTPM
FANTOM5:385.4 Scaled Tags Per Million
Macaque:9.7 nTPM
Pig:3.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - Annotated protein expression
Pending normal tissue analysis

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

461.1
Sample id Sample description nTPM
Substantia nigra
nTPM: 461.1
2699 Male, age 18, unknown 832.6
2409 Female, age 72, unknown 640.9
2241 Male, age 72, unknown 585.4
1851 Male, age 51, unknown 499.2
2665 Male, age 74, both hemispheres 479.1
1916 Female, age 42, unknown 441.2
1889 Female, age 72, unknown 344.4
2590 Female, age 75, unknown 280.3
2583 Male, age 75, right hemisphere 255.8
1941 Male, age 53, unknown 252.1

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3852.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3852.4
Samples: 183

Max nTPM: 11377.2
Min nTPM: 823.6
Std nTPM: 1721.6
Median nTPM: 3485.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 11377.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 9468.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 9004.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 8750.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 8267.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 7753.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 7752.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 7618.8
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 7391.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 7331.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 7006.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 6982.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 6736.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 6728.9
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 6630.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 6537.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 6511.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 6407.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 6403.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 6261.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 6194.1
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 5618.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 5617.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 5588.5
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 5538.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 5476.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 5405.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 5262.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 5254.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 5250.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 5120.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 5088.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 4997.4
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 4966.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 4952.4
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 4949.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 4936.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 4905.4
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 4893.3
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 4859.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 4808.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 4778.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 4761.7
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 4753.4
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 4746.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 4675.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 4658.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 4650.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 4604.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 4575.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 4552.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 4447.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 4447.7
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 4386.7
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 4380.3
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 4314.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 4297.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 4295.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 4294.3
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 4291.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 4287.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 4285.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 4260.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 4232.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 4229.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 4215.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 4176.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 4157.8
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 4140.0
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 4089.2
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 4064.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 4058.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 4054.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 4027.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 3987.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 3937.7
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 3924.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 3908.9
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 3891.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 3883.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 3844.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 3836.0
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 3775.1
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 3722.6
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 3664.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 3650.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 3639.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 3615.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 3586.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 3586.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 3528.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 3485.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 3447.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 3437.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 3424.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 3377.7
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 3344.5
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 3341.6
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 3304.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 3284.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 3273.7
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 3270.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 3243.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 3227.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 3217.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 3211.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 3194.3
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 3169.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 3167.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 3090.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 3084.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 3080.4
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 3070.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 3067.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 3040.1
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 3040.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 3036.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 3026.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 2996.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 2986.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 2974.1
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 2960.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 2945.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 2871.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 2867.2
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 2865.0
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 2830.8
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 2828.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 2811.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 2806.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 2802.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 2779.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 2775.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 2687.7
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 2656.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 2652.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 2636.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 2631.8
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 2572.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 2566.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 2551.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 2542.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 2538.9
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 2526.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 2523.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 2500.3
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 2460.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 2390.7
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 2385.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 2372.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 2371.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 2345.2
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 2344.7
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 2313.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 2305.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 2305.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 2302.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 2287.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 2182.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 2156.2
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 2147.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 2132.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 2059.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 2035.5
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 2019.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 2009.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 1979.5
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 1950.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 1940.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1923.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1918.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 1882.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 1852.2
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 1834.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 1696.0
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 1684.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1605.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1458.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 1386.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 1380.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 1283.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 1044.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 823.6
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

385.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 385.4
FF:10158-103A5 76 years, female 385.4

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 9.7
Samples: 1

Max nTPM: 9.7
Min nTPM: 9.7
Sample A 9.7

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.8
Samples: 3

Max nTPM: 7.6
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 2.7
Sample C Male 7.6

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