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NDUFV2
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  • NDUFV2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:127.9 nTPM
HPA Brain:59.8 nTPM
GTEx:127.9 nTPM
FANTOM5:88.7 Scaled Tags Per Million
Pig:49.4 nTPM
Mouse:199.3 nTPM
Allen mouse:16.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.8
Sample id Sample description nTPM
Amygdala
nTPM: 59.8
2814 Male, age 76, right hemisphere 71.3
2514 Male, age 75, right hemisphere 62.4
1987 Female, age 91, left hemisphere 56.6
2695 Female, age 67, right hemisphere 55.2
2517 Female, age 94, left hemisphere 53.4
Basal amygdala
nTPM: 47.7
1955 Male, age 76, both hemispheres 56.8
2110 Male, age 80, left hemisphere 55.0
2609 Male, age 75, right hemisphere 52.2
2685 Female, age 94, left hemisphere 46.0
2243 Female, age 91, right hemisphere 45.2
2827 Female, age 67, right hemisphere 31.3
Central amygdala
nTPM: 52.0
1905 Male, age 76, both hemispheres 69.1
2515 Male, age 75, right hemisphere 50.8
2826 Female, age 94, left hemisphere 48.4
2239 Male, age 80, left hemisphere 47.6
2701 Female, age 91, right hemisphere 43.9
Corticomedial amygdala
nTPM: 50.7
2240 Male, age 76, both hemispheres 57.6
2829 Male, age 80, left hemisphere 56.9
2428 Male, age 75, right hemisphere 54.6
2429 Female, age 94, left hemisphere 50.0
2242 Female, age 91, right hemisphere 49.5
2535 Female, age 67, right hemisphere 35.7
Lateral amygdala
nTPM: 49.9
1883 Male, age 76, both hemispheres 72.6
2516 Male, age 75, right hemisphere 63.9
2534 Female, age 94, left hemisphere 52.0
2256 Male, age 80, left hemisphere 37.7
2255 Female, age 91, right hemisphere 36.5
2830 Female, age 67, right hemisphere 36.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 127.9
Samples: 181

Max nTPM: 311.1
Min nTPM: 74.6
Std nTPM: 38.0
Median nTPM: 118.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 311.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 286.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 266.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 264.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 217.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 215.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 212.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 196.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 194.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 191.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 189.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 189.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 181.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 179.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 178.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 178.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 177.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 176.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 174.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 172.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 167.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 166.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 163.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 163.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 163.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 162.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 162.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 161.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 160.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 157.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 157.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 156.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 155.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 153.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 152.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 151.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 150.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 150.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 147.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 147.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 147.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 147.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 145.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 144.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 143.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 143.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 142.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 142.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 141.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 141.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 140.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 140.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 139.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 139.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 139.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 138.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 138.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 137.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 136.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 136.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 136.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 135.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 133.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 132.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 132.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 131.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 131.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 130.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 130.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 130.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 130.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 128.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 128.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 128.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 126.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 126.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 126.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 126.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 126.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 125.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 125.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 125.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 125.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 124.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 121.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 121.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 120.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 119.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 119.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 118.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 118.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 118.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 117.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 117.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 117.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 117.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 117.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 117.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 117.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 116.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 116.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 116.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 115.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 115.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 115.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 114.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 114.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 114.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 114.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 113.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 113.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 112.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 112.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 112.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 112.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 112.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 111.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 111.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 111.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 110.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 110.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 109.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 108.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 108.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 108.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 108.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 107.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 107.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 107.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 106.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 105.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 105.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 104.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 104.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 104.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 103.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 103.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 102.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 102.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 101.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 101.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 99.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 99.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 98.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 98.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 97.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 97.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 97.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 96.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 96.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 96.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 96.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 94.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 94.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 93.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 92.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 91.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 91.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 91.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 91.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 90.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 90.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 89.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 89.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 88.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 87.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 87.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 85.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 84.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 83.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 83.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 82.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 79.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 79.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 78.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 77.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 76.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 76.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 76.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 74.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 74.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

88.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 88.7
FF:10151-102I7 76 years, female 88.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.4
Pig sample Sample description nTPM
Amygdala
nTPM: 49.4
Samples: 4

Max nTPM: 55.1
Min nTPM: 43.8
Sample A Female 51.0
Sample B Female 55.1
Sample C Male 47.5
Sample D Male 43.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

199.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 199.3
Samples: 4

Max nTPM: 212.2
Min nTPM: 187.5
Sample A Male 187.5
Sample B Male 212.2
Sample C Female 200.1
Sample D Female 197.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.4
77371763 Antisense, RP_070116_01_D05, Mouse strain C57BL/6J (56 days, male) 22.1
68080679 Antisense, RP_040929_01_D09, Mouse strain C57BL/6J (56 days, male) 19.3
71213788 Antisense, RP_050816_04_F06, Mouse strain C57BL/6J (56 days, male) 7.8

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