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NDUFV2
HPA
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  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • NDUFV2
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
OXIDATIVE PHOSPHORYLATION
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

NDUFV2
Synonyms CI-24k
Gene descriptioni

Full gene name according to HGNC.

NADH:ubiquinone oxidoreductase core subunit V2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Disease related genes
Enzymes
Human disease related genes
Metabolic proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Protein processing (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Cell type enhanced (Colonocytes, Enteric stem cells, Enteric transient amplifying cells, Enterocytes, Epididymal basal cells, Epididymal clear cells, Epididymal efferent duct ciliated cells, Epididymal principal cells, Gastric chief cells, Goblet cells, Paneth cells, Parietal cells)
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Cellular respiration (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Low tissue specificity
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Mitochondria In addition localized to the Nucleoplasm, Cytosol
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 18
Cytoband p11.22
Chromosome location (bp) 9102630 - 9134345
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000178127 (version 109)
Entrez gene 4729
HGNC HGNC:7717
UniProt P19404
GeneCards NDUFV2
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

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Fields »
e.g. Brain enriched, Localized to mitochondria, Non-specific - Cellular respiration

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
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PAE plot
Number of interactions: 6
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CCNC257141150
HSCB6186500
NDUFA271818020
NDUFA921947037
NDUFB318123338
NDUFS724250060
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 60 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
APP4431314110
ATL1117460
BRK18461070
CCNC257141150
COPS3184347228
CRLF3124202
CTNNB147852851313
EIF2S251522290
FAM114A219200
FANCG53526016
GOLM1145600
H2AC25031000
H3C13028291
H3C143282701
H3C152284101
HNRNPK3253126210
HSCB6186500
JADE317521
KLHL2073213162
KRT33B865800
LENG8135400
LGALS9C023005
LNX1123343400
MAGEA2225402
MAGEA2B225202
METTL27141100
MSRB209103
NAP1L305000
NDUFA271818020
NDUFA921947037
OCLN3527018
OTUB112425406
OTX14119400
PCSK709000
PDZK1261500
PHF196242105
PIAS18386640
PPP1R16A335301
RAB38090015
RBM11326608
RNF112018300
RNF183030203
SKIC81830291722
SLU7522700
SMARCB1213384270
SMARCD11710551160
SORL15189134
SPATA22016000
SPATA2L116200
SPRED13309300
SPRED2238608
THAP1582600
TUBB221889082
TXN7262431
VPS26A961847
VSX2020000
WDR8383014038
ZNF19023001
ZNF232222402
ZSCAN22227200
Show allShow less
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 34
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CCNC257141150
CLPP21921105
CS0018640
GRSF12117020
HSCB6186500
LONP16240630
LRPPRC776882
MT-ND1114010
NDUFA103117111
NDUFA127332112
NDUFA1317428034
NDUFA271818020
NDUFA4014800
NDUFA64119015
NDUFA921947037
NDUFB109627410
NDUFB112102800
NDUFB318123338
NDUFB43012010
NDUFB515125040
NDUFB6311428
NDUFB73271707
NDUFB97332112
NDUFS1635129
NDUFS211539013
NDUFS316778013
NDUFS45132010
NDUFS724250060
NDUFS88043012
NDUFV13174400
NDUFV3122500
SDHB171811
SURF101900
UQCRC13292121
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 2
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CBX1292663792
NVL00760
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 8
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
DNAJC3082313038
NDUFA1000035
NDUFA77612033
NDUFA921947037
NDUFB318123338
NDUFS510417238
NDUFS614124050
NDUFS724250060
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene NDUFV2 is associated with 1 reactions in 1 different subsystems, and present in the compartments: Inner mitochondria, Mitochondria. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Oxidative phosphorylation Mitochondria, Cytosol, Peroxisome, Endoplasmic reticulum, Inner mitochondria 106 16 1
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
NDUFV2-201 P19404
Enzymes
Metabolic proteins
Predicted intracellular proteins
Disease related genes
Potential drug targets
Human disease related genes
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
249 aa
27.4 kDa
No 0
NDUFV2-202 E7EPT4
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
252 aa
27.9 kDa
No 0
NDUFV2-207 J3QS34
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
21 aa
2.4 kDa
No 0

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