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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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EVOLUTIONARY MIDBRAIN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:140.7 nTPM
HPA Brain:296.9 nTPM
GTEx:140.7 nTPM
FANTOM5:500.9 Scaled Tags Per Million
Macaque:159.4 nTPM
Mouse:258.3 nTPM
Rat:263.7 nTPM
Pig:377.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

296.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 225.2
2019 Male, age 18, unknown 285.8
2411 Female, age 72, unknown 251.4
1870 Female, age 42, unknown 243.0
1827 Male, age 72, unknown 233.4
1833 Male, age 53, unknown 233.3
2828 Female, age 72, unknown 233.0
1830 Male, age 51, unknown 226.8
2666 Male, age 74, left hemisphere 201.3
2219 Male, age 76, both hemispheres 189.4
2586 Male, age 75, left hemisphere 154.1
Dorsal raphe nucleus
nTPM: 263.9
2298 Female, age 72, unknown 330.6
2016 Female, age 72, unknown 270.0
1828 Male, age 53, unknown 259.4
2750 Male, age 76, both hemispheres 245.8
2047 Male, age 72, unknown 213.7
Inferior colliculus
nTPM: 215.1
2097 Female, age 72, unknown 239.1
1848 Female, age 42, unknown 208.1
1890 Male, age 53, unknown 206.9
2849 Male, age 72, unknown 206.4
Median raphe nucleus
nTPM: 274.6
2220 Male, age 76, midline 274.6
Periaquaductal grey, anterior
nTPM: 262.3
2502 Female, age 75, unknown 267.7
1947 Male, age 18, unknown 263.4
1795 Male, age 51, unknown 255.8
Periaquaductal grey, dorsal
nTPM: 259.0
2850 Male, age 76, both hemispheres 361.6
1831 Male, age 72, unknown 230.4
2464 Female, age 72, unknown 222.2
1840 Male, age 53, unknown 221.9
Periaquaductal grey, lateral
nTPM: 296.9
2272 Male, age 74, both hemispheres 352.5
2140 Male, age 76, both hemispheres 320.6
2053 Male, age 18, unknown 217.5
Pretectal area
nTPM: 258.5
2273 Male, age 74, both hemispheres 374.2
1817 Female, age 42, unknown 280.3
1815 Male, age 53, unknown 270.1
2224 Female, age 72, unknown 267.4
2667 Female, age 75, unknown 264.0
2007 Male, age 72, unknown 259.5
1816 Male, age 51, unknown 240.7
1944 Female, age 72, unknown 229.8
2825 Male, age 18, unknown 226.0
2407 Male, age 75, both hemispheres 222.4
2316 Male, age 76, right hemisphere 209.3
Red nucleus
nTPM: 234.5
2725 Female, age 75, unknown 275.1
1904 Male, age 53, unknown 256.5
2785 Male, age 18, unknown 253.5
1954 Female, age 42, unknown 251.0
1821 Female, age 72, unknown 250.8
2503 Female, age 72, unknown 250.6
1865 Male, age 51, unknown 244.7
2227 Male, age 72, unknown 234.2
2769 Male, age 72, unknown 227.4
2823 Male, age 76, right hemisphere 203.8
2588 Male, age 74, left hemisphere 187.9
2584 Male, age 75, left hemisphere 178.9
Substantia nigra
nTPM: 224.0
1916 Female, age 42, unknown 280.2
2241 Male, age 72, unknown 244.2
1851 Male, age 51, unknown 243.3
1889 Female, age 72, unknown 238.9
1941 Male, age 53, unknown 236.7
2409 Female, age 72, unknown 217.5
2699 Male, age 18, unknown 208.3
2665 Male, age 74, both hemispheres 201.9
2590 Female, age 75, unknown 195.4
2583 Male, age 75, right hemisphere 173.5
Superior colliculus
nTPM: 226.1
1995 Male, age 72, unknown 270.4
1913 Female, age 42, unknown 257.4
2261 Male, age 18, unknown 255.8
2587 Male, age 74, left hemisphere 246.4
2087 Female, age 72, unknown 242.3
1796 Male, age 53, unknown 227.7
1839 Male, age 51, unknown 218.0
2668 Female, age 75, unknown 203.5
1895 Male, age 76, right hemisphere 180.4
2664 Male, age 75, both hemispheres 158.7
Ventral tegmental area
nTPM: 239.6
1915 Female, age 42, unknown 262.8
2223 Female, age 72, unknown 252.7
2218 Male, age 76, both hemispheres 244.6
2410 Female, age 72, unknown 236.4
1942 Male, age 51, unknown 226.6
2021 Male, age 53, unknown 214.4

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 140.7
Samples: 183

Max nTPM: 378.6
Min nTPM: 62.7
Std nTPM: 53.9
Median nTPM: 127.1
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 378.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 357.8
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 335.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 332.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 332.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 324.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 289.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 275.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 252.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 245.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 226.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 224.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 222.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 220.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 218.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 217.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 217.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 217.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 212.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 212.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 210.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 210.0
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 193.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 190.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 187.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 187.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 179.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 175.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 174.7
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 173.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 171.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 170.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 169.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 169.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 168.1
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 163.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 163.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 163.0
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 162.7
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 161.8
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 161.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 159.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 158.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 157.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 153.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 152.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 151.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 149.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 149.4
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 149.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 147.1
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 145.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 145.2
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 144.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 144.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 144.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 143.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 142.6
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 141.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 141.6
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 140.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 139.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 139.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 136.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 135.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 135.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 135.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 135.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 135.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 135.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 134.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 134.4
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 133.7
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 133.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 133.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 132.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 132.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 132.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 131.9
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 131.3
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 131.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 130.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 130.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 130.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 130.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 130.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 129.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 129.1
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 129.1
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 128.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 127.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 127.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 126.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 126.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 125.6
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 125.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 124.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 123.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 123.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 122.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 121.8
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 121.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 120.3
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 120.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 120.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 118.9
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 118.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 118.6
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 118.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 117.8
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 117.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 116.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 115.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 115.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 114.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 114.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 113.9
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 113.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 113.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 113.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 113.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 113.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 112.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 112.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 111.7
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 110.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 110.4
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 110.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 109.6
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 109.1
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 108.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 108.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 108.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 108.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 107.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 107.4
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 107.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 107.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 107.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 106.9
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 106.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 106.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 106.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 106.3
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 106.1
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 106.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 105.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 105.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 105.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 104.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 104.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 104.2
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 104.1
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 103.6
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 103.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 102.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 102.6
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 102.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 101.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 100.8
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 100.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 100.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 100.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 100.1
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 97.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 97.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 97.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 96.6
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 95.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 93.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 92.7
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 92.2
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 91.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 89.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 88.7
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 87.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 85.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 81.7
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 76.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 70.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 70.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 70.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 62.7
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

500.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 500.9
FF:10158-103A5 76 years, female 500.9

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.4
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 98.6
Samples: 1

Max nTPM: 98.6
Min nTPM: 98.6
Sample A 98.6
Midbrain
nTPM: 153.8
Samples: 1

Max nTPM: 153.8
Min nTPM: 153.8
Sample A 153.8
Superior colliculi
nTPM: 159.4
Samples: 1

Max nTPM: 159.4
Min nTPM: 159.4
Sample A 159.4

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

377.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 319.5
Samples: 3

Max nTPM: 360.0
Min nTPM: 294.9
Sample A Female 360.0
Sample B Female 294.9
Sample C Male 303.6
Midbrain
nTPM: 313.6
Samples: 3

Max nTPM: 368.6
Min nTPM: 280.2
Sample B Female 280.2
Sample C Male 368.6
Sample D Male 291.9
Periaqueductal gray
nTPM: 297.6
Samples: 3

Max nTPM: 304.2
Min nTPM: 288.6
Sample B Female 288.6
Sample C Male 299.9
Sample D Male 304.2
Superior colliculi
nTPM: 377.8
Samples: 4

Max nTPM: 449.6
Min nTPM: 334.9
Sample A Female 382.9
Sample B Female 449.6
Sample C Male 343.9
Sample D Male 334.9

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

258.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 258.3
Samples: 4

Max nTPM: 275.1
Min nTPM: 235.7
Sample A 235.7
Sample B 251.6
Sample C 275.1
Sample D 270.8

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

263.7
Rat sample Sample description nTPM
Midbrain
nTPM: 263.7
Samples: 4

Max nTPM: 281.5
Min nTPM: 248.6
Sample A 266.8
Sample A 281.5
Sample A 248.6
Sample A 257.9

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