A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.6
nTPM
Monaco:
59.1
nTPM
Schmiedel:
30.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.6
HPA sample
nTPM
Classical monocyte nTPM: 19.4
Samples: 6
Max nTPM: 45.3
Min nTPM: 6.8
P10809_1003
20.6
P10809_1020
17.5
P10809_1039
45.3
P10809_1058
7.5
P10809_1080
6.8
P10809_1107
18.6
Intermediate monocyte nTPM: 16.1
Samples: 6
Max nTPM: 32.2
Min nTPM: 5.3
P10809_1004
32.2
P10809_1023
13.9
P10809_1042
11.3
P10809_1061
6.0
P10809_1081
5.3
P10809_1108
27.8
Non-classical monocyte nTPM: 20.6
Samples: 5
Max nTPM: 42.7
Min nTPM: 6.5
P10809_1005
42.7
P10809_1053
6.5
P10809_1072
15.3
P10809_1082
10.2
P10809_1109
28.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.1
Monaco sample
nTPM
Classical monocyte nTPM: 59.1
Samples: 4
Max nTPM: 89.7
Min nTPM: 30.6
RHH5313_R3680
40.7
RHH5221_R3593
89.7
RHH5250_R3622
30.6
RHH5279_R3651
75.4
Intermediate monocyte nTPM: 55.0
Samples: 4
Max nTPM: 80.7
Min nTPM: 26.0
RHH5314_R3681
55.4
RHH5222_R3594
80.7
RHH5251_R3623
57.7
RHH5280_R3652
26.0
Non-classical monocyte nTPM: 54.2
Samples: 4
Max nTPM: 73.3
Min nTPM: 15.0
RHH5315_R3682
73.3
RHH5223_R3595
58.0
RHH5252_R3624
70.3
RHH5281_R3653
15.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.2
Schmiedel sample id
TPM
Classical monocyte TPM: 30.2
Samples: 91
Max TPM: 47.7
Min TPM: 17.2
MONOCYTES_1
47.7
MONOCYTES_2
43.9
MONOCYTES_3
43.3
MONOCYTES_4
42.9
MONOCYTES_5
42.5
MONOCYTES_6
40.2
MONOCYTES_7
39.9
MONOCYTES_8
39.0
MONOCYTES_9
38.8
MONOCYTES_10
38.4
MONOCYTES_11
38.4
MONOCYTES_12
38.0
MONOCYTES_13
37.9
MONOCYTES_14
37.9
MONOCYTES_15
37.4
MONOCYTES_16
37.2
MONOCYTES_17
36.9
MONOCYTES_18
36.5
MONOCYTES_19
35.8
MONOCYTES_20
35.8
MONOCYTES_21
35.6
MONOCYTES_22
35.4
MONOCYTES_23
35.1
MONOCYTES_24
35.0
MONOCYTES_25
34.9
MONOCYTES_26
34.7
MONOCYTES_27
34.7
MONOCYTES_28
34.6
MONOCYTES_29
34.0
MONOCYTES_30
34.0
MONOCYTES_31
33.9
MONOCYTES_32
33.8
MONOCYTES_33
33.8
MONOCYTES_34
33.2
MONOCYTES_35
33.0
MONOCYTES_36
32.6
MONOCYTES_37
32.1
MONOCYTES_38
32.0
MONOCYTES_39
31.8
MONOCYTES_40
31.8
MONOCYTES_41
31.7
MONOCYTES_42
31.3
MONOCYTES_43
30.7
MONOCYTES_44
30.6
MONOCYTES_45
30.5
MONOCYTES_46
30.4
MONOCYTES_47
29.7
MONOCYTES_48
28.7
MONOCYTES_49
28.7
MONOCYTES_50
28.7
MONOCYTES_51
28.4
MONOCYTES_52
28.4
MONOCYTES_53
28.4
MONOCYTES_54
28.3
MONOCYTES_55
28.2
MONOCYTES_56
28.1
MONOCYTES_57
28.1
MONOCYTES_58
28.0
MONOCYTES_59
27.3
MONOCYTES_60
27.0
MONOCYTES_61
26.5
MONOCYTES_62
26.2
MONOCYTES_63
26.0
MONOCYTES_64
26.0
MONOCYTES_65
25.8
MONOCYTES_66
25.7
MONOCYTES_67
25.6
MONOCYTES_68
25.4
MONOCYTES_69
25.1
MONOCYTES_70
24.9
MONOCYTES_71
24.8
MONOCYTES_72
24.7
MONOCYTES_73
24.5
MONOCYTES_74
24.3
MONOCYTES_75
24.2
MONOCYTES_76
23.9
MONOCYTES_77
23.3
MONOCYTES_78
22.8
MONOCYTES_79
22.1
MONOCYTES_80
21.6
MONOCYTES_81
20.6
MONOCYTES_82
20.1
MONOCYTES_83
19.9
MONOCYTES_84
19.7
MONOCYTES_85
18.9
MONOCYTES_86
18.9
MONOCYTES_87
18.9
MONOCYTES_88
18.1
MONOCYTES_89
18.1
MONOCYTES_90
17.8
MONOCYTES_91
17.2
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Non-classical monocyte TPM: 23.7
Samples: 90
Max TPM: 40.1
Min TPM: 12.3
M2_1
40.1
M2_2
39.3
M2_3
39.2
M2_4
35.1
M2_5
34.9
M2_6
33.4
M2_7
33.1
M2_8
32.4
M2_9
32.0
M2_10
31.0
M2_11
30.2
M2_12
30.1
M2_13
29.4
M2_14
28.8
M2_15
28.7
M2_16
28.6
M2_17
28.5
M2_18
28.2
M2_19
27.8
M2_20
27.7
M2_21
27.6
M2_22
27.6
M2_23
27.3
M2_24
27.3
M2_25
27.0
M2_26
26.7
M2_27
26.7
M2_28
26.7
M2_29
26.3
M2_30
26.2
M2_31
26.1
M2_32
25.8
M2_33
25.5
M2_34
25.0
M2_35
24.7
M2_36
24.5
M2_37
24.3
M2_38
24.2
M2_39
24.0
M2_40
23.9
M2_41
23.6
M2_42
23.6
M2_43
23.5
M2_44
23.3
M2_45
23.3
M2_46
23.2
M2_47
23.0
M2_48
22.8
M2_49
22.8
M2_50
22.6
M2_51
22.3
M2_52
22.2
M2_53
22.0
M2_54
21.9
M2_55
21.7
M2_56
21.6
M2_57
21.5
M2_58
20.7
M2_59
20.7
M2_60
20.6
M2_61
20.5
M2_62
19.6
M2_63
19.3
M2_64
19.2
M2_65
19.2
M2_66
19.0
M2_67
18.9
M2_68
18.7
M2_69
18.7
M2_70
18.6
M2_71
18.1
M2_72
18.0
M2_73
18.0
M2_74
17.9
M2_75
17.6
M2_76
17.6
M2_77
17.5
M2_78
17.4
M2_79
17.4
M2_80
17.4
M2_81
17.4
M2_82
17.3
M2_83
16.9
M2_84
16.8
M2_85
16.4
M2_86
16.1
M2_87
16.1
M2_88
15.5
M2_89
12.3
M2_90
12.3
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