A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.8
nTPM
Monaco:
9.3
nTPM
Schmiedel:
30.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.8
HPA sample
nTPM
NK-cell nTPM: 9.8
Samples: 6
Max nTPM: 36.9
Min nTPM: 0.9
P10809_1013
3.4
P10809_1033
3.5
P10809_1052
0.9
P10809_1071
1.0
P10809_1093
36.9
P10809_1103
12.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.3
Monaco sample
nTPM
NK-cell nTPM: 9.3
Samples: 4
Max nTPM: 13.6
Min nTPM: 7.0
RHH5316_R3683
7.0
RHH5224_R3596
7.0
RHH5253_R3625
9.6
RHH5282_R3654
13.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.0
Schmiedel sample id
TPM
NK-cell TPM: 30.0
Samples: 90
Max TPM: 37.1
Min TPM: 22.3
NK_1
37.1
NK_2
36.6
NK_3
36.4
NK_4
35.7
NK_5
35.6
NK_6
35.4
NK_7
35.2
NK_8
34.7
NK_9
34.5
NK_10
33.8
NK_11
33.7
NK_12
33.6
NK_13
33.5
NK_14
33.4
NK_15
33.3
NK_16
33.1
NK_17
33.0
NK_18
32.7
NK_19
32.5
NK_20
32.5
NK_21
32.2
NK_22
32.1
NK_23
31.9
NK_24
31.8
NK_25
31.8
NK_26
31.5
NK_27
31.5
NK_28
31.2
NK_29
31.2
NK_30
30.8
NK_31
30.8
NK_32
30.8
NK_33
30.8
NK_34
30.7
NK_35
30.5
NK_36
30.4
NK_37
30.4
NK_38
30.4
NK_39
30.3
NK_40
30.3
NK_41
30.2
NK_42
30.1
NK_43
30.1
NK_44
30.0
NK_45
29.9
NK_46
29.8
NK_47
29.7
NK_48
29.7
NK_49
29.6
NK_50
29.6
NK_51
29.5
NK_52
29.4
NK_53
29.3
NK_54
29.3
NK_55
29.2
NK_56
29.2
NK_57
29.1
NK_58
29.0
NK_59
28.7
NK_60
28.6
NK_61
28.5
NK_62
28.5
NK_63
28.5
NK_64
28.4
NK_65
28.4
NK_66
28.3
NK_67
28.2
NK_68
28.2
NK_69
28.2
NK_70
27.9
NK_71
27.8
NK_72
27.7
NK_73
27.7
NK_74
27.6
NK_75
27.4
NK_76
27.3
NK_77
27.1
NK_78
27.0
NK_79
26.8
NK_80
26.3
NK_81
26.2
NK_82
26.1
NK_83
26.0
NK_84
25.4
NK_85
24.7
NK_86
24.6
NK_87
24.5
NK_88
24.1
NK_89
23.2
NK_90
22.3
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