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  • NPM1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:279.9 nTPM
HPA Brain:221.8 nTPM
GTEx:279.9 nTPM
FANTOM5:224.8 Scaled Tags Per Million
Pig:127.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 162.8
2048 Male, age 55, midline 185.2
2565 Male, age 75, midline 184.4
1981 Female, age 72, midline 183.9
2816 Male, age 47, midline 133.1
2194 Female, age 79, both hemispheres 127.5
Cervical spinal cord, dorsal horn
nTPM: 167.8
2296 Male, age 66, both hemispheres 214.5
2069 Male, age 47, both hemispheres 198.9
2173 Female, age 72, unknown 194.8
1877 Male, age 55, unknown 167.0
2297 Male, age 75, both hemispheres 122.1
2721 Male, age 90, both hemispheres 109.6
Cervical spinal cord, ventral horn
nTPM: 221.8
2480 Male, age 75, both hemispheres 309.9
2809 Male, age 90, both hemispheres 285.3
2098 Female, age 72, unknown 229.4
2295 Male, age 66, both hemispheres 214.5
2068 Male, age 55, unknown 158.2
2820 Female, age 79, both hemispheres 133.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

279.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 279.9
Samples: 204

Max nTPM: 579.2
Min nTPM: 171.5
Std nTPM: 59.5
Median nTPM: 272.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 579.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 443.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 431.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 422.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 417.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 409.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 408.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 404.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 402.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 398.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 396.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 390.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 384.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 381.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 380.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 373.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 372.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 368.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 367.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 366.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 361.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 361.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 358.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 356.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 354.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 353.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 352.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 345.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 344.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 340.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 339.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 335.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 332.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 331.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 330.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 329.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 329.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 327.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 326.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 320.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 318.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 317.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 314.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 314.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 314.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 313.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 313.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 311.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 311.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 310.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 309.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 308.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 307.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 306.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 304.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 304.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 304.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 302.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 300.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 300.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 299.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 298.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 297.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 297.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 296.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 294.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 293.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 293.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 292.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 292.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 292.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 291.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 290.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 289.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 289.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 288.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 287.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 286.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 286.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 285.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 285.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 284.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 284.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 284.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 283.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 283.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 280.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 280.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 279.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 279.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 278.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 278.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 277.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 277.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 277.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 277.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 276.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 276.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 276.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 275.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 273.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 272.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 272.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 271.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 271.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 271.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 271.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 270.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 268.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 267.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 267.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 266.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 266.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 266.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 265.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 265.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 264.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 263.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 263.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 261.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 261.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 260.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 259.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 258.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 258.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 257.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 257.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 255.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 255.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 255.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 254.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 254.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 253.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 252.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 251.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 250.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 250.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 249.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 248.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 247.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 246.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 245.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 245.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 245.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 244.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 243.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 242.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 241.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 238.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 238.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 238.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 238.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 238.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 237.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 237.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 237.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 237.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 236.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 232.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 232.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 231.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 231.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 229.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 229.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 229.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 228.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 228.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 227.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 227.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 227.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 226.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 225.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 224.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 223.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 222.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 221.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 220.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 216.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 216.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 215.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 215.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 212.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 211.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 211.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 211.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 210.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 209.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 208.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 206.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 205.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 205.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 204.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 204.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 203.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 200.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 199.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 190.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 190.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 187.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 187.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 186.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 176.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 173.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 171.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

224.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 224.8
FF:10181-103D1 60 years, female 237.8
FF:10159-103A6 76 years, female 211.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 125.9
Samples: 4

Max nTPM: 143.8
Min nTPM: 108.6
Sample A Female 108.6
Sample B Female 140.8
Sample C Male 143.8
Sample D Male 110.3
Ventral spinal cord
nTPM: 127.3
Samples: 4

Max nTPM: 137.9
Min nTPM: 114.4
Sample A Female 114.4
Sample B Female 127.1
Sample C Male 129.8
Sample D Male 137.9

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