MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:226.9 nTPM
HPA Brain:158.7 nTPM
GTEx:226.9 nTPM
FANTOM5:158.1 Scaled Tags Per Million
Pig:121.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 158.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 138.1
2666 Male, age 74, left hemisphere 160.9
1870 Female, age 42, unknown 151.6
1833 Male, age 53, unknown 147.6
1827 Male, age 72, unknown 143.1
2411 Female, age 72, unknown 137.9
1830 Male, age 51, unknown 137.2
2828 Female, age 72, unknown 133.8
2019 Male, age 18, unknown 130.1
2219 Male, age 76, both hemispheres 128.1
2586 Male, age 75, left hemisphere 110.3
Dorsal raphe nucleus
nTPM: 144.5
2298 Female, age 72, unknown 153.5
2016 Female, age 72, unknown 151.9
1828 Male, age 53, unknown 143.2
2750 Male, age 76, both hemispheres 140.4
2047 Male, age 72, unknown 133.5
Inferior colliculus
nTPM: 136.6
2849 Male, age 72, unknown 153.2
1848 Female, age 42, unknown 136.8
2097 Female, age 72, unknown 129.3
1890 Male, age 53, unknown 127.3
Median raphe nucleus
nTPM: 158.7
2220 Male, age 76, midline 158.7
Periaquaductal grey, anterior
nTPM: 137.6
2502 Female, age 75, unknown 149.1
1947 Male, age 18, unknown 132.8
1795 Male, age 51, unknown 130.9
Periaquaductal grey, dorsal
nTPM: 140.3
2850 Male, age 76, both hemispheres 165.7
1840 Male, age 53, unknown 138.4
1831 Male, age 72, unknown 137.4
2464 Female, age 72, unknown 119.7
Periaquaductal grey, lateral
nTPM: 132.4
2053 Male, age 18, unknown 136.8
2272 Male, age 74, both hemispheres 134.7
2140 Male, age 76, both hemispheres 125.7
Pretectal area
nTPM: 136.6
2224 Female, age 72, unknown 155.3
2825 Male, age 18, unknown 155.0
1817 Female, age 42, unknown 153.5
1815 Male, age 53, unknown 150.4
1816 Male, age 51, unknown 138.2
2273 Male, age 74, both hemispheres 134.6
2007 Male, age 72, unknown 132.8
2316 Male, age 76, right hemisphere 129.3
1944 Female, age 72, unknown 126.2
2667 Female, age 75, unknown 118.1
2407 Male, age 75, both hemispheres 108.7
Red nucleus
nTPM: 144.6
1821 Female, age 72, unknown 174.9
2503 Female, age 72, unknown 169.3
2725 Female, age 75, unknown 166.9
2588 Male, age 74, left hemisphere 155.6
2823 Male, age 76, right hemisphere 147.5
1865 Male, age 51, unknown 142.0
1954 Female, age 42, unknown 137.8
2227 Male, age 72, unknown 133.6
1904 Male, age 53, unknown 132.6
2769 Male, age 72, unknown 127.8
2584 Male, age 75, left hemisphere 125.1
2785 Male, age 18, unknown 122.2
Substantia nigra
nTPM: 146.4
2241 Male, age 72, unknown 171.5
2665 Male, age 74, both hemispheres 164.8
2699 Male, age 18, unknown 157.8
2590 Female, age 75, unknown 155.5
1941 Male, age 53, unknown 146.0
1851 Male, age 51, unknown 141.9
1889 Female, age 72, unknown 140.1
1916 Female, age 42, unknown 138.4
2409 Female, age 72, unknown 124.1
2583 Male, age 75, right hemisphere 124.1
Superior colliculus
nTPM: 134.0
2587 Male, age 74, left hemisphere 181.1
1839 Male, age 51, unknown 154.0
1913 Female, age 42, unknown 139.6
2261 Male, age 18, unknown 133.2
1895 Male, age 76, right hemisphere 131.7
1995 Male, age 72, unknown 130.1
1796 Male, age 53, unknown 125.3
2087 Female, age 72, unknown 119.1
2668 Female, age 75, unknown 113.1
2664 Male, age 75, both hemispheres 112.9
Ventral tegmental area
nTPM: 142.6
2223 Female, age 72, unknown 150.7
2021 Male, age 53, unknown 148.7
1915 Female, age 42, unknown 147.1
2218 Male, age 76, both hemispheres 142.9
2410 Female, age 72, unknown 134.5
1942 Male, age 51, unknown 131.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 226.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 226.9
Samples: 183

Max nTPM: 423.9
Min nTPM: 138.8
Std nTPM: 50.9
Median nTPM: 216.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 423.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 358.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 355.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 340.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 340.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 339.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 335.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 334.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 329.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 322.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 320.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 158.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 158.1
FF:10158-103A5 76 years, female 158.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 121.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 110.0
Samples: 4

Max nTPM: 132.4
Min nTPM: 93.6
Sample A Female 132.4
Sample B Female 105.3
Sample C Male 108.5
Sample D Male 93.6
Midbrain
nTPM: 118.0
Samples: 4

Max nTPM: 151.1
Min nTPM: 100.5
Sample A Female 151.1
Sample B Female 110.2
Sample C Male 110.0
Sample D Male 100.5
Periaqueductal gray
nTPM: 94.3
Samples: 3

Max nTPM: 100.4
Min nTPM: 89.2
Sample B Female 93.4
Sample C Male 100.4
Sample D Male 89.2
Superior colliculi
nTPM: 121.9
Samples: 4

Max nTPM: 128.0
Min nTPM: 109.9
Sample A Female 126.7
Sample B Female 128.0
Sample C Male 122.8
Sample D Male 109.9

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