A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.9
nTPM
Monaco:
23.8
nTPM
Schmiedel:
51.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.9
HPA sample
nTPM
Memory B-cell nTPM: 4.4
Samples: 6
Max nTPM: 7.4
Min nTPM: 2.3
P10809_1017
4.4
P10809_1025
4.6
P10809_1044
7.4
P10809_1063
3.6
P10809_1092
2.3
P10809_1105
4.2
Naive B-cell nTPM: 4.9
Samples: 6
Max nTPM: 7.2
Min nTPM: 3.5
P10809_1011
3.5
P10809_1029
4.2
P10809_1048
6.4
P10809_1067
7.2
P10809_1091
4.5
P10809_1104
3.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 20.5
Samples: 4
Max nTPM: 27.4
Min nTPM: 9.2
RHH5310_R3677
9.2
RHH5218_R3590
23.0
RHH5247_R3619
27.4
RHH5276_R3648
22.4
Naive B-cell nTPM: 21.4
Samples: 4
Max nTPM: 26.0
Min nTPM: 14.5
RHH5308_R3675
22.4
RHH5216_R3588
14.5
RHH5245_R3617
26.0
RHH5274_R3646
22.5
Non-switched memory B-cell nTPM: 23.8
Samples: 4
Max nTPM: 34.7
Min nTPM: 16.7
RHH5309_R3676
20.9
RHH5217_R3589
16.7
RHH5246_R3618
34.7
RHH5275_R3647
22.9
Plasmablast nTPM: 8.3
Samples: 4
Max nTPM: 9.6
Min nTPM: 5.8
RHH5312_R3679
9.6
RHH5220_R3592
8.2
RHH5249_R3621
9.6
RHH5278_R3650
5.8
Switched memory B-cell nTPM: 20.0
Samples: 4
Max nTPM: 25.4
Min nTPM: 15.5
RHH5311_R3678
19.0
RHH5219_R3591
20.0
RHH5248_R3620
25.4
RHH5277_R3649
15.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.7
Schmiedel sample id
TPM
Naive B-cell TPM: 51.7
Samples: 91
Max TPM: 97.5
Min TPM: 29.4
B_CELL_NAIVE_1
97.5
B_CELL_NAIVE_2
88.3
B_CELL_NAIVE_3
77.3
B_CELL_NAIVE_4
74.1
B_CELL_NAIVE_5
70.6
B_CELL_NAIVE_6
66.8
B_CELL_NAIVE_7
65.3
B_CELL_NAIVE_8
65.0
B_CELL_NAIVE_9
64.5
B_CELL_NAIVE_10
63.3
B_CELL_NAIVE_11
63.1
B_CELL_NAIVE_12
62.7
B_CELL_NAIVE_13
62.6
B_CELL_NAIVE_14
61.5
B_CELL_NAIVE_15
61.2
B_CELL_NAIVE_16
60.5
B_CELL_NAIVE_17
59.5
B_CELL_NAIVE_18
59.3
B_CELL_NAIVE_19
59.2
B_CELL_NAIVE_20
57.8
B_CELL_NAIVE_21
57.4
B_CELL_NAIVE_22
57.2
B_CELL_NAIVE_23
56.9
B_CELL_NAIVE_24
56.3
B_CELL_NAIVE_25
56.3
B_CELL_NAIVE_26
56.2
B_CELL_NAIVE_27
55.9
B_CELL_NAIVE_28
55.7
B_CELL_NAIVE_29
55.6
B_CELL_NAIVE_30
54.7
B_CELL_NAIVE_31
54.6
B_CELL_NAIVE_32
54.4
B_CELL_NAIVE_33
54.2
B_CELL_NAIVE_34
53.9
B_CELL_NAIVE_35
53.4
B_CELL_NAIVE_36
52.4
B_CELL_NAIVE_37
52.4
B_CELL_NAIVE_38
52.3
B_CELL_NAIVE_39
51.8
B_CELL_NAIVE_40
51.7
B_CELL_NAIVE_41
51.6
B_CELL_NAIVE_42
51.4
B_CELL_NAIVE_43
51.3
B_CELL_NAIVE_44
51.2
B_CELL_NAIVE_45
51.0
B_CELL_NAIVE_46
50.5
B_CELL_NAIVE_47
50.0
B_CELL_NAIVE_48
49.9
B_CELL_NAIVE_49
49.2
B_CELL_NAIVE_50
48.7
B_CELL_NAIVE_51
48.4
B_CELL_NAIVE_52
48.4
B_CELL_NAIVE_53
48.0
B_CELL_NAIVE_54
47.6
B_CELL_NAIVE_55
47.1
B_CELL_NAIVE_56
47.0
B_CELL_NAIVE_57
47.0
B_CELL_NAIVE_58
46.8
B_CELL_NAIVE_59
46.8
B_CELL_NAIVE_60
46.1
B_CELL_NAIVE_61
46.0
B_CELL_NAIVE_62
46.0
B_CELL_NAIVE_63
45.6
B_CELL_NAIVE_64
44.8
B_CELL_NAIVE_65
44.8
B_CELL_NAIVE_66
44.8
B_CELL_NAIVE_67
44.6
B_CELL_NAIVE_68
44.5
B_CELL_NAIVE_69
44.1
B_CELL_NAIVE_70
44.0
B_CELL_NAIVE_71
43.7
B_CELL_NAIVE_72
43.7
B_CELL_NAIVE_73
43.1
B_CELL_NAIVE_74
42.7
B_CELL_NAIVE_75
42.7
B_CELL_NAIVE_76
42.6
B_CELL_NAIVE_77
42.3
B_CELL_NAIVE_78
42.2
B_CELL_NAIVE_79
41.8
B_CELL_NAIVE_80
41.3
B_CELL_NAIVE_81
41.1
B_CELL_NAIVE_82
41.0
B_CELL_NAIVE_83
40.8
B_CELL_NAIVE_84
39.8
B_CELL_NAIVE_85
39.7
B_CELL_NAIVE_86
39.2
B_CELL_NAIVE_87
39.2
B_CELL_NAIVE_88
37.3
B_CELL_NAIVE_89
37.1
B_CELL_NAIVE_90
29.7
B_CELL_NAIVE_91
29.4
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