MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:102.9 nTPM
HPA Brain:78.3 nTPM
GTEx:102.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 78.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.8
2219 Male, age 76, both hemispheres 108.3
1830 Male, age 51, unknown 69.0
1833 Male, age 53, unknown 68.0
2666 Male, age 74, left hemisphere 67.6
2828 Female, age 72, unknown 52.3
1827 Male, age 72, unknown 50.3
2411 Female, age 72, unknown 48.2
2019 Male, age 18, unknown 46.7
2586 Male, age 75, left hemisphere 44.6
1870 Female, age 42, unknown 42.8
Dorsal raphe nucleus
nTPM: 55.2
2047 Male, age 72, unknown 64.0
2750 Male, age 76, both hemispheres 62.3
1828 Male, age 53, unknown 55.2
2016 Female, age 72, unknown 49.3
2298 Female, age 72, unknown 45.2
Inferior colliculus
nTPM: 58.2
2849 Male, age 72, unknown 99.5
1848 Female, age 42, unknown 58.3
1890 Male, age 53, unknown 43.7
2097 Female, age 72, unknown 31.4
Median raphe nucleus
nTPM: 78.3
2220 Male, age 76, midline 78.3
Periaquaductal grey, anterior
nTPM: 50.3
1947 Male, age 18, unknown 55.2
1795 Male, age 51, unknown 48.9
2502 Female, age 75, unknown 46.9
Periaquaductal grey, dorsal
nTPM: 69.9
2850 Male, age 76, both hemispheres 100.8
2464 Female, age 72, unknown 72.7
1831 Male, age 72, unknown 56.5
1840 Male, age 53, unknown 49.6
Periaquaductal grey, lateral
nTPM: 74.4
2140 Male, age 76, both hemispheres 89.1
2272 Male, age 74, both hemispheres 82.5
2053 Male, age 18, unknown 51.6
Pretectal area
nTPM: 57.1
2667 Female, age 75, unknown 68.1
2407 Male, age 75, both hemispheres 66.4
2224 Female, age 72, unknown 65.2
2316 Male, age 76, right hemisphere 63.3
2825 Male, age 18, unknown 63.0
2273 Male, age 74, both hemispheres 57.6
1815 Male, age 53, unknown 51.8
2007 Male, age 72, unknown 51.0
1944 Female, age 72, unknown 50.6
1816 Male, age 51, unknown 48.0
1817 Female, age 42, unknown 43.2
Red nucleus
nTPM: 50.3
2823 Male, age 76, right hemisphere 68.4
2584 Male, age 75, left hemisphere 59.1
1865 Male, age 51, unknown 53.9
2785 Male, age 18, unknown 52.6
2769 Male, age 72, unknown 52.1
2227 Male, age 72, unknown 50.3
2588 Male, age 74, left hemisphere 50.2
2725 Female, age 75, unknown 48.2
1904 Male, age 53, unknown 47.5
2503 Female, age 72, unknown 43.6
1954 Female, age 42, unknown 42.4
1821 Female, age 72, unknown 35.0
Substantia nigra
nTPM: 50.5
1941 Male, age 53, unknown 76.2
2699 Male, age 18, unknown 75.1
2590 Female, age 75, unknown 48.6
2665 Male, age 74, both hemispheres 48.0
2583 Male, age 75, right hemisphere 47.7
1889 Female, age 72, unknown 44.9
1916 Female, age 42, unknown 42.3
1851 Male, age 51, unknown 41.5
2241 Male, age 72, unknown 40.6
2409 Female, age 72, unknown 40.2
Superior colliculus
nTPM: 53.0
1895 Male, age 76, right hemisphere 64.7
1839 Male, age 51, unknown 62.9
2664 Male, age 75, both hemispheres 57.3
1913 Female, age 42, unknown 54.5
2587 Male, age 74, left hemisphere 54.2
2087 Female, age 72, unknown 51.7
1796 Male, age 53, unknown 48.9
2668 Female, age 75, unknown 48.5
2261 Male, age 18, unknown 45.8
1995 Male, age 72, unknown 41.1
Ventral tegmental area
nTPM: 51.1
2218 Male, age 76, both hemispheres 64.9
2021 Male, age 53, unknown 55.1
2223 Female, age 72, unknown 53.5
1942 Male, age 51, unknown 46.2
2410 Female, age 72, unknown 44.1
1915 Female, age 42, unknown 42.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 102.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 102.9
Samples: 183

Max nTPM: 368.9
Min nTPM: 9.2
Std nTPM: 58.4
Median nTPM: 94.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 368.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 314.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 305.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 280.9
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 237.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 222.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 222.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 219.4
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 210.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 202.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 196.1
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