BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:288.3 nTPM
HPA Brain:436.7 nTPM
GTEx:288.3 nTPM
FANTOM5:365.8 Scaled Tags Per Million
Macaque:220.4 nTPM
Mouse:51.7 nTPM
Rat:107.4 nTPM
Pig:200.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 436.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 369.5
1833 Male, age 53, unknown 446.9
2666 Male, age 74, left hemisphere 445.4
1830 Male, age 51, unknown 436.1
2411 Female, age 72, unknown 415.3
1870 Female, age 42, unknown 377.5
2019 Male, age 18, unknown 367.5
2586 Male, age 75, left hemisphere 337.5
2828 Female, age 72, unknown 300.4
2219 Male, age 76, both hemispheres 290.4
1827 Male, age 72, unknown 278.0
Dorsal raphe nucleus
nTPM: 274.9
2750 Male, age 76, both hemispheres 360.5
2016 Female, age 72, unknown 318.6
1828 Male, age 53, unknown 283.2
2298 Female, age 72, unknown 207.9
2047 Male, age 72, unknown 204.2
Inferior colliculus
nTPM: 281.5
2849 Male, age 72, unknown 305.8
1848 Female, age 42, unknown 279.0
1890 Male, age 53, unknown 272.3
2097 Female, age 72, unknown 268.8
Median raphe nucleus
nTPM: 244.2
2220 Male, age 76, midline 244.2
Periaquaductal grey, anterior
nTPM: 276.2
2502 Female, age 75, unknown 352.3
1947 Male, age 18, unknown 279.5
1795 Male, age 51, unknown 196.8
Periaquaductal grey, dorsal
nTPM: 255.8
2464 Female, age 72, unknown 334.1
1831 Male, age 72, unknown 252.3
1840 Male, age 53, unknown 222.0
2850 Male, age 76, both hemispheres 214.7
Periaquaductal grey, lateral
nTPM: 224.8
2053 Male, age 18, unknown 270.9
2272 Male, age 74, both hemispheres 207.4
2140 Male, age 76, both hemispheres 196.2
Pretectal area
nTPM: 256.9
1815 Male, age 53, unknown 349.3
2316 Male, age 76, right hemisphere 318.2
1817 Female, age 42, unknown 293.1
2007 Male, age 72, unknown 286.4
2825 Male, age 18, unknown 271.8
2407 Male, age 75, both hemispheres 249.5
2224 Female, age 72, unknown 249.4
1944 Female, age 72, unknown 219.5
1816 Male, age 51, unknown 216.0
2667 Female, age 75, unknown 194.2
2273 Male, age 74, both hemispheres 178.1
Red nucleus
nTPM: 436.7
2503 Female, age 72, unknown 531.4
1904 Male, age 53, unknown 478.1
1821 Female, age 72, unknown 469.5
1865 Male, age 51, unknown 463.2
2588 Male, age 74, left hemisphere 462.5
1954 Female, age 42, unknown 429.8
2227 Male, age 72, unknown 419.2
2769 Male, age 72, unknown 411.9
2823 Male, age 76, right hemisphere 406.0
2785 Male, age 18, unknown 396.4
2725 Female, age 75, unknown 391.6
2584 Male, age 75, left hemisphere 380.3
Substantia nigra
nTPM: 331.0
2409 Female, age 72, unknown 444.0
2241 Male, age 72, unknown 379.4
1851 Male, age 51, unknown 357.7
2665 Male, age 74, both hemispheres 340.0
2699 Male, age 18, unknown 338.0
2590 Female, age 75, unknown 325.8
2583 Male, age 75, right hemisphere 299.3
1889 Female, age 72, unknown 283.9
1916 Female, age 42, unknown 278.5
1941 Male, age 53, unknown 263.7
Superior colliculus
nTPM: 316.5
1913 Female, age 42, unknown 407.7
1995 Male, age 72, unknown 404.7
2587 Male, age 74, left hemisphere 384.1
1839 Male, age 51, unknown 358.7
2668 Female, age 75, unknown 341.0
1895 Male, age 76, right hemisphere 297.5
2664 Male, age 75, both hemispheres 254.5
1796 Male, age 53, unknown 246.0
2261 Male, age 18, unknown 238.0
2087 Female, age 72, unknown 233.1
Ventral tegmental area
nTPM: 317.4
2410 Female, age 72, unknown 372.3
2223 Female, age 72, unknown 356.1
1942 Male, age 51, unknown 310.2
1915 Female, age 42, unknown 306.3
2021 Male, age 53, unknown 291.1
2218 Male, age 76, both hemispheres 268.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 288.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 288.3
Samples: 183

Max nTPM: 862.9
Min nTPM: 64.9
Std nTPM: 142.1
Median nTPM: 267.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 862.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 806.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 732.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 730.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 724.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 666.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 576.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 575.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 557.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 543.0
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 538.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 365.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 365.8
FF:10158-103A5 76 years, female 365.8

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 220.4
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 220.4
Samples: 1

Max nTPM: 220.4
Min nTPM: 220.4
Sample A 220.4
Midbrain
nTPM: 151.4
Samples: 1

Max nTPM: 151.4
Min nTPM: 151.4
Sample A 151.4
Superior colliculi
nTPM: 169.8
Samples: 1

Max nTPM: 169.8
Min nTPM: 169.8
Sample A 169.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 200.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 200.6
Samples: 3

Max nTPM: 241.7
Min nTPM: 170.8
Sample A Female 241.7
Sample B Female 170.8
Sample C Male 189.4
Midbrain
nTPM: 175.3
Samples: 3

Max nTPM: 205.5
Min nTPM: 158.2
Sample B Female 205.5
Sample C Male 162.3
Sample D Male 158.2
Periaqueductal gray
nTPM: 171.2
Samples: 3

Max nTPM: 175.8
Min nTPM: 162.0
Sample B Female 175.8
Sample C Male 175.8
Sample D Male 162.0
Superior colliculi
nTPM: 183.3
Samples: 4

Max nTPM: 245.9
Min nTPM: 130.7
Sample A Female 245.9
Sample B Female 130.7
Sample C Male 180.4
Sample D Male 176.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 51.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.7
Samples: 4

Max nTPM: 53.4
Min nTPM: 50.0
Sample A 51.4
Sample B 50.0
Sample C 52.0
Sample D 53.4

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 107.4
Rat sample Sample description nTPM
Midbrain
nTPM: 107.4
Samples: 4

Max nTPM: 109.5
Min nTPM: 105.2
Sample A 106.1
Sample A 109.5
Sample A 108.7
Sample A 105.2

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