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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • TSPYL2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:123.4 nTPM
FANTOM5:185.5 Scaled Tags Per Million
Pig:161.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044133
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 123.4
Samples: 300

Max nTPM: 311.6
Min nTPM: 34.8
Std nTPM: 54.5
Median nTPM: 116.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 311.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 283.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 270.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 270.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 269.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 257.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 251.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 249.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 243.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 240.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 238.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 230.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 229.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 225.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 225.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 222.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 220.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 217.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 213.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 211.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 209.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 209.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 206.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 206.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 205.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 201.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 199.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 199.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 198.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 198.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 197.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 197.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 196.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 196.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 195.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 194.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 194.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 192.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 189.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 188.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 187.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 186.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 182.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 181.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 181.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 180.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 179.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 179.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 178.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 178.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 177.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 177.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 176.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 175.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 174.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 174.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 172.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 172.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 172.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 172.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 171.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 171.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 170.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 170.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 169.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 169.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 168.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 167.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 167.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 167.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 166.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 166.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 165.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 165.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 163.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 163.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 162.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 160.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 159.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 158.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 156.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 155.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 155.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 154.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 153.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 152.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 151.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 151.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 151.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 148.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 148.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 147.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 147.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 146.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 145.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 145.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 144.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 143.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 143.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 143.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 142.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 142.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 142.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 142.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 141.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 140.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 140.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 138.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 138.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 137.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 136.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 136.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 133.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 132.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 131.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 131.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 128.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 128.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 126.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 126.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 126.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 125.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 125.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 124.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 124.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 124.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 124.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 123.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 122.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 122.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 122.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 121.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 121.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 120.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 120.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 119.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 119.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 119.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 118.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 118.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 117.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 117.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 117.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 117.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 117.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 116.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 116.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 116.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 116.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 116.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 115.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 115.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 115.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 115.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 115.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 115.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 114.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 114.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 114.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 113.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 112.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 112.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 112.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 112.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 111.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 109.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 108.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 108.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 106.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 106.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 105.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 105.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 105.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 105.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 104.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 104.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 104.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 104.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 103.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 102.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 100.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 99.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 99.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 99.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 99.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 98.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 98.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 98.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 97.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 97.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 97.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 96.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 96.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 95.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 94.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 94.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 94.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 93.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 92.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 92.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 92.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 92.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 91.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 91.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 91.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 90.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 90.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 90.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 89.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 89.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 88.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 88.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 87.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 86.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 85.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 85.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 84.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 83.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 83.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 83.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 83.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 82.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 82.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 82.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 81.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 80.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 79.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 78.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 78.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 77.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 77.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 76.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 76.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 75.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 74.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 74.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 73.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 73.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 72.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 72.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 71.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 71.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 70.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 70.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 69.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 69.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 68.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 68.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 68.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 68.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 66.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 66.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 66.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 66.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 65.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 64.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 64.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 63.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 63.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 62.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 62.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 61.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 61.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 61.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 61.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 61.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 61.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 61.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 60.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 60.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 58.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 58.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 58.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 58.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 57.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 57.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 54.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 54.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 54.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 52.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 52.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 52.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 50.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 49.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 48.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 48.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 47.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 45.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 45.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 44.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 42.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 42.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 41.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 40.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 40.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 39.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 38.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 37.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 35.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 34.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

185.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 185.5
FF:10164-103B2 76 years, female 185.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.6
Pig sample Sample description nTPM
Caudate
nTPM: 161.6
Samples: 4

Max nTPM: 175.2
Min nTPM: 149.4
Sample A Female 149.4
Sample B Female 171.6
Sample C Male 175.2
Sample D Male 150.3

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