BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:220.6 nTPM
HPA Brain:271.0 nTPM
GTEx:220.6 nTPM
FANTOM5:474.2 Scaled Tags Per Million
Mouse:148.1 nTPM
Rat:176.2 nTPM
Pig:176.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 271.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 217.5
2219 Male, age 76, both hemispheres 283.4
2586 Male, age 75, left hemisphere 246.9
2411 Female, age 72, unknown 238.6
1830 Male, age 51, unknown 238.4
1833 Male, age 53, unknown 223.5
2019 Male, age 18, unknown 213.6
1870 Female, age 42, unknown 211.9
2828 Female, age 72, unknown 199.4
1827 Male, age 72, unknown 162.1
2666 Male, age 74, left hemisphere 157.8
Dorsal raphe nucleus
nTPM: 164.5
2750 Male, age 76, both hemispheres 238.2
2016 Female, age 72, unknown 182.5
1828 Male, age 53, unknown 167.0
2047 Male, age 72, unknown 126.7
2298 Female, age 72, unknown 108.0
Inferior colliculus
nTPM: 159.3
1890 Male, age 53, unknown 186.6
1848 Female, age 42, unknown 152.1
2849 Male, age 72, unknown 151.0
2097 Female, age 72, unknown 147.5
Median raphe nucleus
nTPM: 102.3
2220 Male, age 76, midline 102.3
Periaquaductal grey, anterior
nTPM: 150.5
2502 Female, age 75, unknown 180.9
1947 Male, age 18, unknown 139.8
1795 Male, age 51, unknown 130.9
Periaquaductal grey, dorsal
nTPM: 115.9
2464 Female, age 72, unknown 170.5
1831 Male, age 72, unknown 116.5
1840 Male, age 53, unknown 105.3
2850 Male, age 76, both hemispheres 71.2
Periaquaductal grey, lateral
nTPM: 122.2
2272 Male, age 74, both hemispheres 139.8
2053 Male, age 18, unknown 139.5
2140 Male, age 76, both hemispheres 87.2
Pretectal area
nTPM: 154.9
2316 Male, age 76, right hemisphere 228.4
1815 Male, age 53, unknown 201.6
1817 Female, age 42, unknown 180.7
2007 Male, age 72, unknown 179.5
2407 Male, age 75, both hemispheres 169.9
2667 Female, age 75, unknown 144.1
2825 Male, age 18, unknown 144.1
2224 Female, age 72, unknown 124.5
2273 Male, age 74, both hemispheres 114.8
1816 Male, age 51, unknown 112.1
1944 Female, age 72, unknown 104.1
Red nucleus
nTPM: 271.0
2769 Male, age 72, unknown 319.4
2503 Female, age 72, unknown 317.6
2227 Male, age 72, unknown 317.5
1904 Male, age 53, unknown 313.1
1865 Male, age 51, unknown 298.3
2823 Male, age 76, right hemisphere 291.8
1821 Female, age 72, unknown 270.6
2588 Male, age 74, left hemisphere 270.6
2785 Male, age 18, unknown 259.2
1954 Female, age 42, unknown 241.9
2584 Male, age 75, left hemisphere 191.8
2725 Female, age 75, unknown 159.6
Substantia nigra
nTPM: 170.1
2699 Male, age 18, unknown 236.2
1851 Male, age 51, unknown 202.6
2583 Male, age 75, right hemisphere 192.4
2665 Male, age 74, both hemispheres 187.9
2409 Female, age 72, unknown 180.1
1889 Female, age 72, unknown 168.4
2590 Female, age 75, unknown 160.3
1916 Female, age 42, unknown 138.7
1941 Male, age 53, unknown 117.8
2241 Male, age 72, unknown 116.9
Superior colliculus
nTPM: 193.9
2668 Female, age 75, unknown 277.3
1995 Male, age 72, unknown 254.7
1895 Male, age 76, right hemisphere 236.1
1913 Female, age 42, unknown 219.9
1839 Male, age 51, unknown 192.8
2664 Male, age 75, both hemispheres 184.6
2587 Male, age 74, left hemisphere 180.8
1796 Male, age 53, unknown 147.8
2261 Male, age 18, unknown 128.9
2087 Female, age 72, unknown 116.4
Ventral tegmental area
nTPM: 167.6
2410 Female, age 72, unknown 203.9
2223 Female, age 72, unknown 193.5
1915 Female, age 42, unknown 164.9
1942 Male, age 51, unknown 161.1
2021 Male, age 53, unknown 151.6
2218 Male, age 76, both hemispheres 130.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 220.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 220.6
Samples: 183

Max nTPM: 622.2
Min nTPM: 21.1
Std nTPM: 98.5
Median nTPM: 200.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 622.2
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 470.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 470.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 459.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 448.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 425.3
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 417.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 409.7
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 398.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 397.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 397.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 474.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 474.2
FF:10158-103A5 76 years, female 474.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 176.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 176.1
Samples: 3

Max nTPM: 233.8
Min nTPM: 141.9
Sample A Female 233.8
Sample B Female 141.9
Sample C Male 152.7
Midbrain
nTPM: 168.0
Samples: 3

Max nTPM: 214.0
Min nTPM: 142.0
Sample B Female 214.0
Sample C Male 142.0
Sample D Male 148.1
Periaqueductal gray
nTPM: 146.9
Samples: 3

Max nTPM: 185.1
Min nTPM: 124.0
Sample B Female 185.1
Sample C Male 124.0
Sample D Male 131.7
Superior colliculi
nTPM: 167.6
Samples: 4

Max nTPM: 219.1
Min nTPM: 93.6
Sample A Female 219.1
Sample B Female 93.6
Sample C Male 171.0
Sample D Male 186.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 148.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 148.1
Samples: 4

Max nTPM: 156.3
Min nTPM: 138.0
Sample A 138.0
Sample B 156.3
Sample C 150.9
Sample D 147.0

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 176.2
Rat sample Sample description nTPM
Midbrain
nTPM: 176.2
Samples: 4

Max nTPM: 191.6
Min nTPM: 160.2
Sample A 191.6
Sample A 182.1
Sample A 160.2
Sample A 170.9

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