BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.6 nTPM
HPA Brain:56.1 nTPM
GTEx:10.6 nTPM
FANTOM5:3.0 Scaled Tags Per Million
Macaque:53.0 nTPM
Mouse:71.8 nTPM
Rat:80.2 nTPM
Pig:74.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 56.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.1
2219 Male, age 76, both hemispheres 38.4
1870 Female, age 42, unknown 35.9
2411 Female, age 72, unknown 32.1
2019 Male, age 18, unknown 30.9
2666 Male, age 74, left hemisphere 27.7
1827 Male, age 72, unknown 23.3
2586 Male, age 75, left hemisphere 21.9
1833 Male, age 53, unknown 21.6
1830 Male, age 51, unknown 16.8
2828 Female, age 72, unknown 12.4
Dorsal raphe nucleus
nTPM: 36.9
2298 Female, age 72, unknown 62.3
1828 Male, age 53, unknown 41.7
2016 Female, age 72, unknown 32.9
2047 Male, age 72, unknown 27.2
2750 Male, age 76, both hemispheres 20.6
Inferior colliculus
nTPM: 37.3
2097 Female, age 72, unknown 51.6
2849 Male, age 72, unknown 41.5
1890 Male, age 53, unknown 29.5
1848 Female, age 42, unknown 26.6
Median raphe nucleus
nTPM: 28.3
2220 Male, age 76, midline 28.3
Periaquaductal grey, anterior
nTPM: 34.9
1795 Male, age 51, unknown 56.8
2502 Female, age 75, unknown 24.9
1947 Male, age 18, unknown 23.1
Periaquaductal grey, dorsal
nTPM: 46.5
1831 Male, age 72, unknown 53.4
2850 Male, age 76, both hemispheres 52.8
1840 Male, age 53, unknown 48.6
2464 Female, age 72, unknown 31.2
Periaquaductal grey, lateral
nTPM: 56.1
2272 Male, age 74, both hemispheres 86.5
2140 Male, age 76, both hemispheres 43.6
2053 Male, age 18, unknown 38.1
Pretectal area
nTPM: 55.0
2273 Male, age 74, both hemispheres 109.4
1816 Male, age 51, unknown 74.3
2007 Male, age 72, unknown 66.1
1944 Female, age 72, unknown 63.1
2224 Female, age 72, unknown 59.7
1815 Male, age 53, unknown 52.2
1817 Female, age 42, unknown 50.2
2667 Female, age 75, unknown 42.5
2407 Male, age 75, both hemispheres 33.2
2825 Male, age 18, unknown 31.9
2316 Male, age 76, right hemisphere 22.2
Red nucleus
nTPM: 11.1
2785 Male, age 18, unknown 27.6
2584 Male, age 75, left hemisphere 18.9
2725 Female, age 75, unknown 16.4
2588 Male, age 74, left hemisphere 13.5
1821 Female, age 72, unknown 8.6
2227 Male, age 72, unknown 7.8
2503 Female, age 72, unknown 7.7
1865 Male, age 51, unknown 7.6
2769 Male, age 72, unknown 7.5
1954 Female, age 42, unknown 6.9
1904 Male, age 53, unknown 6.4
2823 Male, age 76, right hemisphere 4.5
Substantia nigra
nTPM: 27.4
1889 Female, age 72, unknown 41.1
2409 Female, age 72, unknown 36.2
1916 Female, age 42, unknown 32.6
1851 Male, age 51, unknown 31.6
1941 Male, age 53, unknown 29.9
2241 Male, age 72, unknown 29.9
2699 Male, age 18, unknown 19.7
2665 Male, age 74, both hemispheres 19.2
2590 Female, age 75, unknown 17.9
2583 Male, age 75, right hemisphere 15.8
Superior colliculus
nTPM: 39.7
2668 Female, age 75, unknown 52.5
2087 Female, age 72, unknown 46.6
1796 Male, age 53, unknown 46.3
2261 Male, age 18, unknown 45.8
2587 Male, age 74, left hemisphere 40.9
1995 Male, age 72, unknown 40.2
1913 Female, age 42, unknown 35.1
2664 Male, age 75, both hemispheres 33.6
1895 Male, age 76, right hemisphere 30.5
1839 Male, age 51, unknown 25.1
Ventral tegmental area
nTPM: 35.3
2218 Male, age 76, both hemispheres 42.2
2021 Male, age 53, unknown 39.3
2223 Female, age 72, unknown 34.8
1915 Female, age 42, unknown 32.9
1942 Male, age 51, unknown 31.6
2410 Female, age 72, unknown 30.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.6
Samples: 183

Max nTPM: 113.7
Min nTPM: 1.0
Std nTPM: 11.7
Median nTPM: 7.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 113.7
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 60.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 40.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 39.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 39.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 34.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 34.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 32.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 30.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 30.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 29.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.0
FF:10158-103A5 76 years, female 3.0

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 53.0
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 53.0
Samples: 1

Max nTPM: 53.0
Min nTPM: 53.0
Sample A 53.0
Midbrain
nTPM: 51.6
Samples: 1

Max nTPM: 51.6
Min nTPM: 51.6
Sample A 51.6
Superior colliculi
nTPM: 43.4
Samples: 1

Max nTPM: 43.4
Min nTPM: 43.4
Sample A 43.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 74.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.9
Samples: 3

Max nTPM: 53.4
Min nTPM: 23.2
Sample A Female 53.4
Sample B Female 23.2
Sample C Male 40.2
Midbrain
nTPM: 74.8
Samples: 3

Max nTPM: 122.7
Min nTPM: 30.0
Sample B Female 30.0
Sample C Male 122.7
Sample D Male 71.8
Periaqueductal gray
nTPM: 28.1
Samples: 3

Max nTPM: 36.7
Min nTPM: 23.3
Sample B Female 24.3
Sample C Male 36.7
Sample D Male 23.3
Superior colliculi
nTPM: 62.1
Samples: 4

Max nTPM: 116.4
Min nTPM: 39.1
Sample A Female 48.3
Sample B Female 44.6
Sample C Male 116.4
Sample D Male 39.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 71.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.8
Samples: 4

Max nTPM: 80.3
Min nTPM: 66.5
Sample A 66.5
Sample B 67.2
Sample C 80.3
Sample D 73.2

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 80.2
Rat sample Sample description nTPM
Midbrain
nTPM: 80.2
Samples: 4

Max nTPM: 90.1
Min nTPM: 75.2
Sample A 90.1
Sample A 75.2
Sample A 78.8
Sample A 76.5

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