A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
199.2
nTPM
Monaco:
59.0
nTPM
Schmiedel:
22.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
199.2
HPA sample
nTPM
Classical monocyte nTPM: 132.9
Samples: 6
Max nTPM: 172.5
Min nTPM: 101.7
P10809_1003
121.9
P10809_1020
101.7
P10809_1039
137.8
P10809_1058
133.2
P10809_1080
130.5
P10809_1107
172.5
Intermediate monocyte nTPM: 145.6
Samples: 6
Max nTPM: 208.7
Min nTPM: 89.1
P10809_1004
104.9
P10809_1023
137.5
P10809_1042
156.0
P10809_1061
89.1
P10809_1081
177.4
P10809_1108
208.7
Non-classical monocyte nTPM: 199.2
Samples: 5
Max nTPM: 305.9
Min nTPM: 103.6
P10809_1005
170.9
P10809_1053
154.3
P10809_1072
103.6
P10809_1082
261.2
P10809_1109
305.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.0
Monaco sample
nTPM
Classical monocyte nTPM: 33.9
Samples: 4
Max nTPM: 49.1
Min nTPM: 21.1
RHH5313_R3680
49.1
RHH5221_R3593
36.1
RHH5250_R3622
21.1
RHH5279_R3651
29.1
Intermediate monocyte nTPM: 58.9
Samples: 4
Max nTPM: 75.5
Min nTPM: 33.9
RHH5314_R3681
53.2
RHH5222_R3594
75.5
RHH5251_R3623
73.2
RHH5280_R3652
33.9
Non-classical monocyte nTPM: 55.0
Samples: 4
Max nTPM: 73.1
Min nTPM: 37.7
RHH5315_R3682
73.1
RHH5223_R3595
65.0
RHH5252_R3624
37.7
RHH5281_R3653
44.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.0
Schmiedel sample id
TPM
Classical monocyte TPM: 10.9
Samples: 91
Max TPM: 14.2
Min TPM: 8.0
MONOCYTES_1
14.2
MONOCYTES_2
13.6
MONOCYTES_3
13.5
MONOCYTES_4
13.4
MONOCYTES_5
13.3
MONOCYTES_6
12.8
MONOCYTES_7
12.7
MONOCYTES_8
12.6
MONOCYTES_9
12.5
MONOCYTES_10
12.4
MONOCYTES_11
12.3
MONOCYTES_12
12.3
MONOCYTES_13
12.2
MONOCYTES_14
12.2
MONOCYTES_15
12.1
MONOCYTES_16
12.1
MONOCYTES_17
12.1
MONOCYTES_18
12.1
MONOCYTES_19
12.0
MONOCYTES_20
12.0
MONOCYTES_21
11.9
MONOCYTES_22
11.8
MONOCYTES_23
11.7
MONOCYTES_24
11.7
MONOCYTES_25
11.6
MONOCYTES_26
11.6
MONOCYTES_27
11.5
MONOCYTES_28
11.4
MONOCYTES_29
11.4
MONOCYTES_30
11.4
MONOCYTES_31
11.4
MONOCYTES_32
11.3
MONOCYTES_33
11.3
MONOCYTES_34
11.2
MONOCYTES_35
11.2
MONOCYTES_36
11.1
MONOCYTES_37
11.1
MONOCYTES_38
11.1
MONOCYTES_39
11.0
MONOCYTES_40
11.0
MONOCYTES_41
11.0
MONOCYTES_42
10.9
MONOCYTES_43
10.9
MONOCYTES_44
10.9
MONOCYTES_45
10.8
MONOCYTES_46
10.8
MONOCYTES_47
10.7
MONOCYTES_48
10.7
MONOCYTES_49
10.7
MONOCYTES_50
10.7
MONOCYTES_51
10.7
MONOCYTES_52
10.7
MONOCYTES_53
10.5
MONOCYTES_54
10.4
MONOCYTES_55
10.4
MONOCYTES_56
10.4
MONOCYTES_57
10.3
MONOCYTES_58
10.3
MONOCYTES_59
10.2
MONOCYTES_60
10.2
MONOCYTES_61
10.2
MONOCYTES_62
10.2
MONOCYTES_63
10.2
MONOCYTES_64
10.2
MONOCYTES_65
10.2
MONOCYTES_66
10.1
MONOCYTES_67
10.1
MONOCYTES_68
10.0
MONOCYTES_69
10.0
MONOCYTES_70
10.0
MONOCYTES_71
9.9
MONOCYTES_72
9.9
MONOCYTES_73
9.8
MONOCYTES_74
9.8
MONOCYTES_75
9.8
MONOCYTES_76
9.6
MONOCYTES_77
9.6
MONOCYTES_78
9.5
MONOCYTES_79
9.5
MONOCYTES_80
9.4
MONOCYTES_81
9.4
MONOCYTES_82
9.3
MONOCYTES_83
9.2
MONOCYTES_84
9.2
MONOCYTES_85
9.0
MONOCYTES_86
8.8
MONOCYTES_87
8.8
MONOCYTES_88
8.7
MONOCYTES_89
8.7
MONOCYTES_90
8.1
MONOCYTES_91
8.0
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Non-classical monocyte TPM: 22.0
Samples: 90
Max TPM: 37.0
Min TPM: 14.3
M2_1
37.0
M2_2
36.5
M2_3
34.4
M2_4
30.6
M2_5
30.3
M2_6
29.9
M2_7
29.0
M2_8
28.4
M2_9
28.0
M2_10
27.9
M2_11
27.3
M2_12
27.2
M2_13
26.5
M2_14
26.3
M2_15
26.1
M2_16
25.7
M2_17
25.6
M2_18
25.6
M2_19
25.1
M2_20
25.0
M2_21
24.9
M2_22
24.9
M2_23
24.5
M2_24
24.5
M2_25
23.8
M2_26
23.7
M2_27
23.6
M2_28
23.6
M2_29
23.5
M2_30
23.3
M2_31
23.2
M2_32
23.1
M2_33
23.0
M2_34
22.9
M2_35
22.8
M2_36
22.7
M2_37
22.6
M2_38
22.5
M2_39
22.4
M2_40
22.2
M2_41
22.1
M2_42
22.0
M2_43
21.6
M2_44
21.1
M2_45
21.0
M2_46
20.9
M2_47
20.9
M2_48
20.8
M2_49
20.8
M2_50
20.7
M2_51
20.7
M2_52
20.7
M2_53
20.7
M2_54
20.4
M2_55
20.4
M2_56
20.3
M2_57
20.2
M2_58
19.8
M2_59
19.8
M2_60
19.6
M2_61
19.4
M2_62
19.0
M2_63
19.0
M2_64
18.8
M2_65
18.8
M2_66
18.8
M2_67
18.8
M2_68
18.7
M2_69
18.7
M2_70
18.3
M2_71
18.3
M2_72
18.2
M2_73
18.2
M2_74
18.0
M2_75
17.9
M2_76
17.6
M2_77
17.5
M2_78
17.3
M2_79
17.2
M2_80
16.8
M2_81
16.7
M2_82
16.6
M2_83
16.5
M2_84
16.3
M2_85
16.1
M2_86
16.0
M2_87
15.7
M2_88
15.4
M2_89
15.0
M2_90
14.3
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