BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:285.6 nTPM
HPA Brain:392.5 nTPM
GTEx:285.6 nTPM
FANTOM5:152.9 Scaled Tags Per Million
Macaque:325.8 nTPM
Mouse:373.8 nTPM
Rat:216.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 392.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 300.0
1827 Male, age 72, unknown 342.1
2666 Male, age 74, left hemisphere 325.8
1870 Female, age 42, unknown 322.8
2219 Male, age 76, both hemispheres 317.7
2019 Male, age 18, unknown 305.6
1833 Male, age 53, unknown 298.5
2411 Female, age 72, unknown 286.2
1830 Male, age 51, unknown 279.6
2828 Female, age 72, unknown 279.5
2586 Male, age 75, left hemisphere 242.5
Dorsal raphe nucleus
nTPM: 319.6
1828 Male, age 53, unknown 345.1
2298 Female, age 72, unknown 326.2
2750 Male, age 76, both hemispheres 325.5
2047 Male, age 72, unknown 318.8
2016 Female, age 72, unknown 282.2
Inferior colliculus
nTPM: 311.4
2097 Female, age 72, unknown 332.8
1890 Male, age 53, unknown 307.7
2849 Male, age 72, unknown 307.6
1848 Female, age 42, unknown 297.5
Median raphe nucleus
nTPM: 392.5
2220 Male, age 76, midline 392.5
Periaquaductal grey, anterior
nTPM: 313.4
1947 Male, age 18, unknown 359.9
1795 Male, age 51, unknown 303.6
2502 Female, age 75, unknown 276.6
Periaquaductal grey, dorsal
nTPM: 293.9
2850 Male, age 76, both hemispheres 325.6
1831 Male, age 72, unknown 312.3
1840 Male, age 53, unknown 300.1
2464 Female, age 72, unknown 237.6
Periaquaductal grey, lateral
nTPM: 271.7
2272 Male, age 74, both hemispheres 278.9
2053 Male, age 18, unknown 277.0
2140 Male, age 76, both hemispheres 259.3
Pretectal area
nTPM: 338.4
1817 Female, age 42, unknown 413.9
1944 Female, age 72, unknown 395.4
1816 Male, age 51, unknown 389.2
2007 Male, age 72, unknown 381.2
1815 Male, age 53, unknown 359.9
2224 Female, age 72, unknown 318.8
2667 Female, age 75, unknown 316.2
2273 Male, age 74, both hemispheres 298.5
2825 Male, age 18, unknown 295.6
2407 Male, age 75, both hemispheres 287.4
2316 Male, age 76, right hemisphere 266.4
Red nucleus
nTPM: 292.1
1821 Female, age 72, unknown 373.2
2725 Female, age 75, unknown 361.8
2503 Female, age 72, unknown 300.1
2785 Male, age 18, unknown 293.2
1954 Female, age 42, unknown 291.9
2584 Male, age 75, left hemisphere 290.0
2823 Male, age 76, right hemisphere 283.5
2588 Male, age 74, left hemisphere 272.7
1865 Male, age 51, unknown 268.8
2769 Male, age 72, unknown 257.8
2227 Male, age 72, unknown 257.6
1904 Male, age 53, unknown 255.1
Substantia nigra
nTPM: 343.4
1916 Female, age 42, unknown 431.1
1889 Female, age 72, unknown 376.7
2241 Male, age 72, unknown 371.9
1941 Male, age 53, unknown 367.5
1851 Male, age 51, unknown 354.5
2699 Male, age 18, unknown 328.2
2665 Male, age 74, both hemispheres 327.0
2409 Female, age 72, unknown 314.0
2583 Male, age 75, right hemisphere 291.5
2590 Female, age 75, unknown 271.7
Superior colliculus
nTPM: 292.0
2668 Female, age 75, unknown 347.7
2587 Male, age 74, left hemisphere 323.9
2087 Female, age 72, unknown 316.1
1895 Male, age 76, right hemisphere 314.3
1839 Male, age 51, unknown 297.8
1796 Male, age 53, unknown 294.2
2261 Male, age 18, unknown 279.9
1913 Female, age 42, unknown 263.6
1995 Male, age 72, unknown 243.9
2664 Male, age 75, both hemispheres 238.8
Ventral tegmental area
nTPM: 318.5
2218 Male, age 76, both hemispheres 370.2
1915 Female, age 42, unknown 362.6
1942 Male, age 51, unknown 301.5
2410 Female, age 72, unknown 300.4
2223 Female, age 72, unknown 297.9
2021 Male, age 53, unknown 278.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 285.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 285.6
Samples: 183

Max nTPM: 652.2
Min nTPM: 150.3
Std nTPM: 92.9
Median nTPM: 259.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 652.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 649.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 622.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 586.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 555.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 492.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 480.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 474.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 456.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 455.2
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 444.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 152.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 152.9
FF:10158-103A5 76 years, female 152.9

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 325.8
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 325.8
Samples: 1

Max nTPM: 325.8
Min nTPM: 325.8
Sample A 325.8
Midbrain
nTPM: 275.1
Samples: 1

Max nTPM: 275.1
Min nTPM: 275.1
Sample A 275.1
Superior colliculi
nTPM: 267.5
Samples: 1

Max nTPM: 267.5
Min nTPM: 267.5
Sample A 267.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 373.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 373.8
Samples: 4

Max nTPM: 395.0
Min nTPM: 358.6
Sample A 395.0
Sample B 375.8
Sample C 358.6
Sample D 365.6

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 216.5
Rat sample Sample description nTPM
Midbrain
nTPM: 216.5
Samples: 4

Max nTPM: 222.1
Min nTPM: 211.6
Sample A 214.3
Sample A 222.1
Sample A 218.0
Sample A 211.6

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