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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:225.4 nTPM
HPA Brain:138.6 nTPM
GTEx:225.4 nTPM
FANTOM5:353.0 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 94.5
1981 Female, age 72, midline 131.6
2565 Male, age 75, midline 104.8
2816 Male, age 47, midline 102.2
2194 Female, age 79, both hemispheres 68.4
2048 Male, age 55, midline 65.6
Cervical spinal cord, dorsal horn
nTPM: 127.1
2297 Male, age 75, both hemispheres 260.3
2721 Male, age 90, both hemispheres 129.7
2296 Male, age 66, both hemispheres 102.9
2069 Male, age 47, both hemispheres 98.1
1877 Male, age 55, unknown 86.9
2173 Female, age 72, unknown 84.8
Cervical spinal cord, ventral horn
nTPM: 138.6
2098 Female, age 72, unknown 284.3
2809 Male, age 90, both hemispheres 185.8
2480 Male, age 75, both hemispheres 116.2
2295 Male, age 66, both hemispheres 96.6
2068 Male, age 55, unknown 94.3
2820 Female, age 79, both hemispheres 54.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

225.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 225.4
Samples: 204

Max nTPM: 2500.3
Min nTPM: 29.6
Std nTPM: 213.2
Median nTPM: 178.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 2500.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 856.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 780.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 776.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 730.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 636.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 609.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 587.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 533.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 515.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 466.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 465.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 462.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 451.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 444.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 433.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 428.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 424.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 416.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 414.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 403.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 401.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 400.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 389.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 389.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 377.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 370.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 369.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 352.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 341.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 339.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 333.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 322.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 320.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 318.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 315.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 305.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 303.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 302.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 301.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 300.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 298.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 297.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 296.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 290.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 285.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 285.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 282.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 279.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 278.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 277.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 270.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 268.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 266.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 264.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 264.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 262.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 261.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 248.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 246.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 241.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 241.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 241.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 240.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 237.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 234.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 230.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 226.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 226.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 224.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 223.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 218.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 218.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 217.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 217.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 217.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 213.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 212.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 209.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 209.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 206.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 205.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 202.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 201.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 201.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 197.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 197.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 195.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 195.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 194.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 192.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 190.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 186.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 185.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 183.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 182.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 181.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 180.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 180.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 179.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 179.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 179.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 176.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 176.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 175.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 175.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 175.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 173.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 171.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 169.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 169.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 168.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 165.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 164.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 163.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 157.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 157.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 156.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 153.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 153.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 152.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 151.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 149.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 148.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 147.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 147.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 145.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 145.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 144.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 142.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 140.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 137.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 137.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 135.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 133.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 133.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 131.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 131.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 128.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 125.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 125.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 124.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 122.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 122.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 120.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 119.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 118.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 117.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 117.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 116.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 114.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 113.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 113.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 110.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 109.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 108.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 108.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 106.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 106.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 106.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 105.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 105.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 105.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 104.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 104.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 104.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 104.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 102.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 100.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 100.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 99.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 99.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 98.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 98.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 97.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 95.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 94.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 93.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 93.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 93.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 89.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 88.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 88.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 87.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 85.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 84.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 83.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 83.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 82.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 80.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 78.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 78.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 77.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 70.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 70.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 69.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 69.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 66.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 64.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 63.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 59.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 54.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 49.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 29.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

353.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 353.0
FF:10181-103D1 60 years, female 415.8
FF:10159-103A6 76 years, female 290.1

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