HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:79.5 nTPM
HPA Brain:121.2 nTPM
GTEx:79.5 nTPM
FANTOM5:320.1 Scaled Tags Per Million
Pig:153.4 nTPM
Mouse:359.9 nTPM
Allen mouse:11.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA014750Antibody CAB004260
Glial cells MediumHigh
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 121.2
Sample id Sample description nTPM
Hippocampus
nTPM: 111.6
1855 Male, age 76, left hemisphere 118.4
2529 Female, age 94, left hemisphere 118.4
1898 Male, age 80, left hemisphere 117.3
2621 Female, age 67, right hemisphere 111.8
1911 Female, age 85, right hemisphere 107.0
2148 Female, age 91, left hemisphere 96.7
Dentate gyrus
nTPM: 108.3
2530 Female, age 94, left hemisphere 151.7
2010 Male, age 76, both hemispheres 126.4
2528 Male, age 74, both hemispheres 122.2
2246 Female, age 85, both hemispheres 91.4
1927 Female, age 91, both hemispheres 84.8
2531 Female, age 67, both hemispheres 73.2
Entorhinal gyrus
nTPM: 102.1
2117 Female, age 91, right hemisphere 154.0
2764 Male, age 80, right hemisphere 113.4
1787 Male, age 76, left hemisphere 96.2
1938 Female, age 85, left hemisphere 93.1
2613 Female, age 94, left hemisphere 89.3
2686 Male, age 75, right hemisphere 66.5
Hippocampus, CA1
nTPM: 96.4
1873 Female, age 85, both hemispheres 107.5
2527 Male, age 74, both hemispheres 104.9
2749 Male, age 80, left hemisphere 100.3
2082 Female, age 91, right hemisphere 87.4
2045 Male, age 76, both hemispheres 81.8
Hippocampus, CA2
nTPM: 112.7
2249 Male, age 74, both hemispheres 142.4
1963 Male, age 80, left hemisphere 119.6
1940 Female, age 85, left hemisphere 111.3
2437 Female, age 94, left hemisphere 109.1
2113 Female, age 91, right hemisphere 101.0
1892 Male, age 76, both hemispheres 92.6
Hippocampus, CA3
nTPM: 92.6
1891 Female, age 85, both hemispheres 114.1
2436 Male, age 74, both hemispheres 101.9
1867 Male, age 76, both hemispheres 100.7
2620 Female, age 94, left hemisphere 93.9
2137 Male, age 80, left hemisphere 79.3
2861 Female, age 67, both hemispheres 65.7
Parahippocampal cortex
nTPM: 90.5
1990 Female, age 91, right hemisphere 106.6
2532 Female, age 72, left hemisphere 100.8
2018 Male, age 76, both hemispheres 100.0
1850 Male, age 80, both hemispheres 96.6
1933 Female, age 85, both hemispheres 90.0
2245 Female, age 91, both hemispheres 90.0
2692 Male, age 74, both hemispheres 89.8
2250 Female, age 67, right hemisphere 87.3
2693 Female, age 94, both hemispheres 77.6
2622 Female, age 67, right hemisphere 66.0
Perirhinal gyrus
nTPM: 84.4
1794 Male, age 80, right hemisphere 92.0
2521 Female, age 94, right hemisphere 85.0
1847 Female, age 91, left hemisphere 84.5
1841 Female, age 85, right hemisphere 82.9
2848 Male, age 76, right hemisphere 77.6
Subiculum
nTPM: 121.2
2042 Male, age 76, both hemispheres 148.8
1901 Male, age 80, both hemispheres 128.2
2729 Female, age 91, right hemisphere 118.2
2619 Male, age 74, both hemispheres 112.3
1977 Female, age 85, both hemispheres 110.4
2438 Female, age 94, left hemisphere 109.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 79.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 79.5
Samples: 255

Max nTPM: 170.3
Min nTPM: 38.6
Std nTPM: 23.2
Median nTPM: 75.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 170.3
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 168.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 148.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 145.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 143.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 141.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 141.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 137.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 136.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 135.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 133.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 320.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 320.1
FF:10153-102I9 76 years, female 354.6
FF:10169-103B7 60 years, female 285.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 153.4
Pig sample Sample description nTPM
Subiculum
nTPM: 127.9
Samples: 4

Max nTPM: 160.2
Min nTPM: 113.7
Sample A Female 160.2
Sample B Female 119.6
Sample C Male 118.0
Sample D Male 113.7
Dorsal hippocampus
nTPM: 153.4
Samples: 4

Max nTPM: 206.3
Min nTPM: 99.0
Sample A Female 206.3
Sample B Female 140.3
Sample C Male 168.0
Sample D Male 99.0
Entorhinal cortex
nTPM: 120.8
Samples: 4

Max nTPM: 138.4
Min nTPM: 99.9
Sample A Female 122.8
Sample B Female 122.0
Sample C Male 138.4
Sample D Male 99.9
Ventral hippocampus
nTPM: 144.6
Samples: 4

Max nTPM: 187.0
Min nTPM: 98.8
Sample A Female 143.9
Sample B Female 98.8
Sample C Male 187.0
Sample D Male 148.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 359.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 333.4
Samples: 4

Max nTPM: 346.2
Min nTPM: 321.4
Sample A Male 346.2
Sample B Male 324.7
Sample C Female 341.4
Sample D Female 321.4
Hippocampal formation
nTPM: 359.9
Samples: 4

Max nTPM: 393.0
Min nTPM: 331.5
Sample A Male 354.8
Sample B Male 331.5
Sample C Female 393.0
Sample D Female 360.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 11.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.9
69736022 Antisense, RP_050503_04_A07, Mouse strain C57BL/6J (56 days, male) 11.9

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