MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:90.2 nTPM
HPA Brain:170.6 nTPM
GTEx:90.2 nTPM
FANTOM5:563.8 Scaled Tags Per Million
Pig:212.1 nTPM
Mouse:483.3 nTPM
Allen mouse:14.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 170.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 145.7
2019 Male, age 18, unknown 179.9
1870 Female, age 42, unknown 178.4
2411 Female, age 72, unknown 166.3
1830 Male, age 51, unknown 164.1
1833 Male, age 53, unknown 161.4
2828 Female, age 72, unknown 154.5
1827 Male, age 72, unknown 119.4
2666 Male, age 74, left hemisphere 115.5
2586 Male, age 75, left hemisphere 110.2
2219 Male, age 76, both hemispheres 107.0
Dorsal raphe nucleus
nTPM: 140.0
2750 Male, age 76, both hemispheres 184.0
2016 Female, age 72, unknown 136.0
2298 Female, age 72, unknown 132.5
1828 Male, age 53, unknown 129.8
2047 Male, age 72, unknown 117.7
Inferior colliculus
nTPM: 111.7
1848 Female, age 42, unknown 118.3
2097 Female, age 72, unknown 113.8
1890 Male, age 53, unknown 110.4
2849 Male, age 72, unknown 104.4
Median raphe nucleus
nTPM: 112.6
2220 Male, age 76, midline 112.6
Periaquaductal grey, anterior
nTPM: 131.1
2502 Female, age 75, unknown 138.1
1947 Male, age 18, unknown 134.9
1795 Male, age 51, unknown 120.3
Periaquaductal grey, dorsal
nTPM: 107.5
2850 Male, age 76, both hemispheres 117.4
2464 Female, age 72, unknown 117.0
1831 Male, age 72, unknown 105.0
1840 Male, age 53, unknown 90.5
Periaquaductal grey, lateral
nTPM: 128.2
2272 Male, age 74, both hemispheres 155.1
2053 Male, age 18, unknown 117.8
2140 Male, age 76, both hemispheres 111.6
Pretectal area
nTPM: 132.1
2273 Male, age 74, both hemispheres 161.5
1815 Male, age 53, unknown 146.8
1817 Female, age 42, unknown 141.4
2007 Male, age 72, unknown 139.4
2667 Female, age 75, unknown 138.7
2316 Male, age 76, right hemisphere 138.0
2407 Male, age 75, both hemispheres 133.3
2224 Female, age 72, unknown 121.8
2825 Male, age 18, unknown 112.8
1944 Female, age 72, unknown 112.4
1816 Male, age 51, unknown 106.7
Red nucleus
nTPM: 170.6
1904 Male, age 53, unknown 201.6
1865 Male, age 51, unknown 198.2
2785 Male, age 18, unknown 191.5
1821 Female, age 72, unknown 191.0
2769 Male, age 72, unknown 186.6
2227 Male, age 72, unknown 183.4
1954 Female, age 42, unknown 175.9
2823 Male, age 76, right hemisphere 171.8
2503 Female, age 72, unknown 165.6
2725 Female, age 75, unknown 135.6
2584 Male, age 75, left hemisphere 126.4
2588 Male, age 74, left hemisphere 120.1
Substantia nigra
nTPM: 130.2
2590 Female, age 75, unknown 148.7
2409 Female, age 72, unknown 148.2
1851 Male, age 51, unknown 147.4
1916 Female, age 42, unknown 136.2
1889 Female, age 72, unknown 132.1
2583 Male, age 75, right hemisphere 126.0
1941 Male, age 53, unknown 121.7
2241 Male, age 72, unknown 121.0
2699 Male, age 18, unknown 118.7
2665 Male, age 74, both hemispheres 102.0
Superior colliculus
nTPM: 135.5
1995 Male, age 72, unknown 170.1
1913 Female, age 42, unknown 168.8
2587 Male, age 74, left hemisphere 160.5
1895 Male, age 76, right hemisphere 137.4
1839 Male, age 51, unknown 131.2
2668 Female, age 75, unknown 129.2
1796 Male, age 53, unknown 125.3
2261 Male, age 18, unknown 123.3
2087 Female, age 72, unknown 106.1
2664 Male, age 75, both hemispheres 102.7
Ventral tegmental area
nTPM: 138.7
2410 Female, age 72, unknown 167.9
2223 Female, age 72, unknown 159.8
2021 Male, age 53, unknown 130.7
1915 Female, age 42, unknown 130.4
2218 Male, age 76, both hemispheres 122.1
1942 Male, age 51, unknown 121.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 90.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 90.2
Samples: 183

Max nTPM: 232.7
Min nTPM: 45.0
Std nTPM: 25.4
Median nTPM: 85.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 232.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 191.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 175.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 153.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 153.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 151.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 146.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 141.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 139.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 138.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 136.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 563.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 563.8
FF:10158-103A5 76 years, female 563.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 212.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 203.7
Samples: 4

Max nTPM: 256.5
Min nTPM: 161.4
Sample A Female 218.8
Sample B Female 161.4
Sample C Male 178.1
Sample D Male 256.5
Midbrain
nTPM: 212.1
Samples: 4

Max nTPM: 353.2
Min nTPM: 142.4
Sample A Female 353.2
Sample B Female 189.1
Sample C Male 163.8
Sample D Male 142.4
Periaqueductal gray
nTPM: 164.3
Samples: 3

Max nTPM: 175.2
Min nTPM: 158.3
Sample B Female 175.2
Sample C Male 159.5
Sample D Male 158.3
Superior colliculi
nTPM: 197.5
Samples: 4

Max nTPM: 228.9
Min nTPM: 170.3
Sample A Female 228.9
Sample B Female 170.3
Sample C Male 186.0
Sample D Male 204.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 483.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 483.3
Samples: 4

Max nTPM: 497.2
Min nTPM: 464.6
Sample A Male 479.2
Sample B Male 464.6
Sample C Female 492.3
Sample D Female 497.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.4
69736022 Antisense, RP_050503_04_A07, Mouse strain C57BL/6J (56 days, male) 14.4

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