BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:622.3 nTPM
HPA Brain:266.7 nTPM
GTEx:622.3 nTPM
FANTOM5:173.4 Scaled Tags Per Million
Mouse:153.2 nTPM
Rat:73.3 nTPM
Pig:62.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 266.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 235.0
2411 Female, age 72, unknown 269.2
2666 Male, age 74, left hemisphere 260.7
1827 Male, age 72, unknown 260.2
2586 Male, age 75, left hemisphere 246.0
2019 Male, age 18, unknown 234.2
1870 Female, age 42, unknown 227.3
2828 Female, age 72, unknown 226.1
1833 Male, age 53, unknown 222.6
2219 Male, age 76, both hemispheres 208.6
1830 Male, age 51, unknown 194.9
Dorsal raphe nucleus
nTPM: 242.4
2298 Female, age 72, unknown 297.7
1828 Male, age 53, unknown 244.8
2750 Male, age 76, both hemispheres 233.5
2047 Male, age 72, unknown 226.3
2016 Female, age 72, unknown 209.9
Inferior colliculus
nTPM: 237.9
2097 Female, age 72, unknown 269.5
1890 Male, age 53, unknown 240.4
1848 Female, age 42, unknown 225.3
2849 Male, age 72, unknown 216.3
Median raphe nucleus
nTPM: 226.9
2220 Male, age 76, midline 226.9
Periaquaductal grey, anterior
nTPM: 266.7
1795 Male, age 51, unknown 283.2
1947 Male, age 18, unknown 277.7
2502 Female, age 75, unknown 239.2
Periaquaductal grey, dorsal
nTPM: 212.0
1840 Male, age 53, unknown 234.8
2464 Female, age 72, unknown 216.5
1831 Male, age 72, unknown 202.5
2850 Male, age 76, both hemispheres 194.1
Periaquaductal grey, lateral
nTPM: 219.8
2272 Male, age 74, both hemispheres 249.2
2053 Male, age 18, unknown 209.8
2140 Male, age 76, both hemispheres 200.4
Pretectal area
nTPM: 254.3
2007 Male, age 72, unknown 314.1
1817 Female, age 42, unknown 302.3
1944 Female, age 72, unknown 291.1
1816 Male, age 51, unknown 283.7
2224 Female, age 72, unknown 254.5
2667 Female, age 75, unknown 250.5
1815 Male, age 53, unknown 250.3
2273 Male, age 74, both hemispheres 247.1
2825 Male, age 18, unknown 228.7
2316 Male, age 76, right hemisphere 202.7
2407 Male, age 75, both hemispheres 172.3
Red nucleus
nTPM: 257.4
2503 Female, age 72, unknown 301.8
1821 Female, age 72, unknown 298.5
2725 Female, age 75, unknown 279.3
2227 Male, age 72, unknown 276.1
2769 Male, age 72, unknown 270.4
2785 Male, age 18, unknown 257.5
1865 Male, age 51, unknown 247.1
1904 Male, age 53, unknown 247.1
2588 Male, age 74, left hemisphere 242.7
1954 Female, age 42, unknown 242.1
2823 Male, age 76, right hemisphere 222.6
2584 Male, age 75, left hemisphere 203.7
Substantia nigra
nTPM: 265.0
1916 Female, age 42, unknown 357.3
1851 Male, age 51, unknown 321.1
1889 Female, age 72, unknown 278.9
1941 Male, age 53, unknown 258.5
2665 Male, age 74, both hemispheres 257.8
2409 Female, age 72, unknown 254.2
2699 Male, age 18, unknown 252.2
2241 Male, age 72, unknown 231.3
2590 Female, age 75, unknown 228.9
2583 Male, age 75, right hemisphere 209.9
Superior colliculus
nTPM: 232.5
1796 Male, age 53, unknown 282.2
2668 Female, age 75, unknown 269.1
2261 Male, age 18, unknown 260.1
2087 Female, age 72, unknown 258.2
2587 Male, age 74, left hemisphere 231.7
1913 Female, age 42, unknown 220.6
1895 Male, age 76, right hemisphere 204.3
2664 Male, age 75, both hemispheres 199.9
1995 Male, age 72, unknown 199.8
1839 Male, age 51, unknown 199.2
Ventral tegmental area
nTPM: 259.5
2410 Female, age 72, unknown 305.7
1915 Female, age 42, unknown 290.8
2218 Male, age 76, both hemispheres 258.1
1942 Male, age 51, unknown 250.4
2223 Female, age 72, unknown 249.3
2021 Male, age 53, unknown 202.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 622.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 622.3
Samples: 183

Max nTPM: 1288.0
Min nTPM: 278.2
Std nTPM: 164.6
Median nTPM: 595.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1288.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1241.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1073.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1044.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1036.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1026.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1003.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 961.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 953.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 939.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 929.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 173.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.4
FF:10158-103A5 76 years, female 173.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 62.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.0
Samples: 3

Max nTPM: 68.3
Min nTPM: 41.2
Sample A Female 68.3
Sample B Female 41.2
Sample C Male 46.4
Midbrain
nTPM: 52.6
Samples: 3

Max nTPM: 54.8
Min nTPM: 50.9
Sample B Female 50.9
Sample C Male 54.8
Sample D Male 52.1
Periaqueductal gray
nTPM: 45.2
Samples: 3

Max nTPM: 48.9
Min nTPM: 40.9
Sample B Female 45.8
Sample C Male 48.9
Sample D Male 40.9
Superior colliculi
nTPM: 62.7
Samples: 4

Max nTPM: 76.9
Min nTPM: 51.8
Sample A Female 76.9
Sample B Female 60.4
Sample C Male 61.6
Sample D Male 51.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 153.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 153.2
Samples: 4

Max nTPM: 157.5
Min nTPM: 145.5
Sample A 153.3
Sample B 156.3
Sample C 145.5
Sample D 157.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 73.3
Rat sample Sample description nTPM
Midbrain
nTPM: 73.3
Samples: 4

Max nTPM: 79.4
Min nTPM: 68.1
Sample A 79.4
Sample A 68.1
Sample A 70.0
Sample A 75.7

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