A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.9
nTPM
Monaco:
90.4
nTPM
Schmiedel:
78.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.9
HPA sample
nTPM
Classical monocyte nTPM: 8.1
Samples: 6
Max nTPM: 9.8
Min nTPM: 6.5
P10809_1003
8.8
P10809_1020
9.8
P10809_1039
7.0
P10809_1058
6.5
P10809_1080
7.4
P10809_1107
9.1
Intermediate monocyte nTPM: 12.9
Samples: 6
Max nTPM: 17.2
Min nTPM: 8.7
P10809_1004
11.1
P10809_1023
17.2
P10809_1042
15.8
P10809_1061
14.5
P10809_1081
8.7
P10809_1108
10.1
Non-classical monocyte nTPM: 11.2
Samples: 5
Max nTPM: 18.6
Min nTPM: 0.0
P10809_1005
18.6
P10809_1053
11.9
P10809_1072
0.0
P10809_1082
10.8
P10809_1109
14.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.4
Monaco sample
nTPM
Classical monocyte nTPM: 48.9
Samples: 4
Max nTPM: 53.5
Min nTPM: 41.9
RHH5313_R3680
47.4
RHH5221_R3593
41.9
RHH5250_R3622
53.5
RHH5279_R3651
52.7
Intermediate monocyte nTPM: 90.4
Samples: 4
Max nTPM: 137.5
Min nTPM: 49.4
RHH5314_R3681
49.4
RHH5222_R3594
80.8
RHH5251_R3623
137.5
RHH5280_R3652
94.0
Non-classical monocyte nTPM: 80.8
Samples: 4
Max nTPM: 100.7
Min nTPM: 63.9
RHH5315_R3682
73.7
RHH5223_R3595
63.9
RHH5252_R3624
100.7
RHH5281_R3653
84.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.9
Schmiedel sample id
TPM
Classical monocyte TPM: 51.2
Samples: 91
Max TPM: 83.4
Min TPM: 23.3
MONOCYTES_1
83.4
MONOCYTES_2
82.8
MONOCYTES_3
81.0
MONOCYTES_4
79.4
MONOCYTES_5
79.3
MONOCYTES_6
77.8
MONOCYTES_7
74.0
MONOCYTES_8
73.1
MONOCYTES_9
71.0
MONOCYTES_10
70.8
MONOCYTES_11
70.6
MONOCYTES_12
67.6
MONOCYTES_13
67.3
MONOCYTES_14
67.1
MONOCYTES_15
67.0
MONOCYTES_16
66.9
MONOCYTES_17
65.4
MONOCYTES_18
65.2
MONOCYTES_19
64.2
MONOCYTES_20
64.0
MONOCYTES_21
63.8
MONOCYTES_22
63.7
MONOCYTES_23
63.4
MONOCYTES_24
63.2
MONOCYTES_25
61.9
MONOCYTES_26
61.3
MONOCYTES_27
60.5
MONOCYTES_28
60.4
MONOCYTES_29
60.2
MONOCYTES_30
59.0
MONOCYTES_31
58.5
MONOCYTES_32
57.8
MONOCYTES_33
57.4
MONOCYTES_34
56.4
MONOCYTES_35
56.2
MONOCYTES_36
55.2
MONOCYTES_37
53.7
MONOCYTES_38
53.2
MONOCYTES_39
52.9
MONOCYTES_40
52.1
MONOCYTES_41
51.9
MONOCYTES_42
51.1
MONOCYTES_43
51.0
MONOCYTES_44
50.8
MONOCYTES_45
50.6
MONOCYTES_46
50.3
MONOCYTES_47
50.3
MONOCYTES_48
50.2
MONOCYTES_49
50.0
MONOCYTES_50
49.4
MONOCYTES_51
48.4
MONOCYTES_52
48.0
MONOCYTES_53
47.7
MONOCYTES_54
47.5
MONOCYTES_55
47.4
MONOCYTES_56
46.3
MONOCYTES_57
46.1
MONOCYTES_58
46.0
MONOCYTES_59
45.9
MONOCYTES_60
45.6
MONOCYTES_61
45.2
MONOCYTES_62
45.0
MONOCYTES_63
44.9
MONOCYTES_64
44.4
MONOCYTES_65
42.5
MONOCYTES_66
42.1
MONOCYTES_67
39.5
MONOCYTES_68
39.4
MONOCYTES_69
39.0
MONOCYTES_70
38.6
MONOCYTES_71
38.5
MONOCYTES_72
38.0
MONOCYTES_73
37.6
MONOCYTES_74
37.2
MONOCYTES_75
37.0
MONOCYTES_76
36.9
MONOCYTES_77
34.7
MONOCYTES_78
34.2
MONOCYTES_79
33.5
MONOCYTES_80
32.0
MONOCYTES_81
31.9
MONOCYTES_82
30.3
MONOCYTES_83
28.8
MONOCYTES_84
28.4
MONOCYTES_85
27.5
MONOCYTES_86
27.3
MONOCYTES_87
26.4
MONOCYTES_88
24.2
MONOCYTES_89
24.2
MONOCYTES_90
23.8
MONOCYTES_91
23.3
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Non-classical monocyte TPM: 78.9
Samples: 90
Max TPM: 156.8
Min TPM: 25.6
M2_1
156.8
M2_2
150.2
M2_3
149.5
M2_4
142.4
M2_5
133.9
M2_6
129.8
M2_7
121.9
M2_8
120.8
M2_9
120.8
M2_10
119.5
M2_11
115.4
M2_12
112.9
M2_13
112.3
M2_14
111.8
M2_15
109.3
M2_16
108.1
M2_17
108.0
M2_18
106.8
M2_19
103.5
M2_20
102.2
M2_21
101.5
M2_22
101.3
M2_23
98.8
M2_24
98.0
M2_25
95.9
M2_26
93.2
M2_27
93.1
M2_28
92.6
M2_29
91.4
M2_30
90.6
M2_31
88.8
M2_32
88.8
M2_33
88.5
M2_34
88.4
M2_35
87.9
M2_36
87.6
M2_37
86.4
M2_38
84.7
M2_39
82.8
M2_40
81.6
M2_41
80.9
M2_42
79.8
M2_43
79.4
M2_44
79.1
M2_45
76.5
M2_46
76.2
M2_47
75.2
M2_48
75.2
M2_49
75.0
M2_50
73.6
M2_51
73.6
M2_52
73.5
M2_53
72.5
M2_54
71.1
M2_55
69.1
M2_56
66.7
M2_57
66.6
M2_58
66.1
M2_59
65.9
M2_60
65.7
M2_61
64.9
M2_62
63.8
M2_63
63.0
M2_64
61.6
M2_65
58.7
M2_66
54.9
M2_67
52.8
M2_68
51.9
M2_69
51.5
M2_70
51.4
M2_71
48.9
M2_72
47.5
M2_73
46.6
M2_74
46.6
M2_75
45.4
M2_76
45.1
M2_77
44.6
M2_78
43.6
M2_79
42.7
M2_80
42.2
M2_81
41.6
M2_82
41.5
M2_83
40.3
M2_84
39.2
M2_85
38.6
M2_86
35.2
M2_87
34.7
M2_88
31.0
M2_89
27.2
M2_90
25.6
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