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RPS23
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPS23
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:730.1 nTPM
FANTOM5:328.2 Scaled Tags Per Million
Pig:0.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA054853
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

730.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 730.1
Samples: 300

Max nTPM: 2286.1
Min nTPM: 310.5
Std nTPM: 224.1
Median nTPM: 703.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2286.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1577.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1550.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1520.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1434.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1295.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1275.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1266.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1238.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1216.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1214.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1205.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1187.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1186.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1172.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1135.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1098.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1096.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1076.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1075.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1074.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1056.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1045.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1027.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1015.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1014.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1014.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1006.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1000.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 986.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 978.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 977.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 973.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 970.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 967.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 965.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 958.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 955.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 949.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 948.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 942.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 928.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 918.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 916.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 916.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 916.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 913.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 906.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 898.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 896.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 888.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 887.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 882.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 881.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 869.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 868.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 868.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 868.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 865.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 858.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 853.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 853.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 850.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 849.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 849.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 847.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 845.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 845.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 837.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 834.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 830.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 826.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 826.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 825.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 824.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 824.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 812.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 811.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 809.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 809.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 808.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 807.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 801.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 799.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 799.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 799.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 797.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 796.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 792.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 790.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 787.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 787.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 787.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 786.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 786.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 782.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 781.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 778.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 776.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 775.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 775.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 774.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 771.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 769.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 762.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 759.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 759.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 756.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 753.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 752.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 752.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 748.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 748.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 748.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 748.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 746.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 746.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 744.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 742.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 739.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 739.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 738.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 737.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 736.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 735.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 735.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 734.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 733.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 732.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 732.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 731.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 728.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 726.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 723.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 720.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 720.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 719.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 718.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 717.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 713.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 712.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 712.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 710.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 710.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 709.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 709.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 709.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 708.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 705.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 704.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 702.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 699.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 695.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 691.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 691.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 685.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 683.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 683.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 677.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 676.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 675.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 675.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 674.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 674.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 674.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 673.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 671.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 671.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 667.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 667.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 666.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 665.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 663.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 663.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 663.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 662.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 662.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 660.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 659.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 658.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 656.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 653.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 651.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 649.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 644.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 642.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 641.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 641.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 639.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 638.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 638.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 637.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 637.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 634.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 633.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 630.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 629.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 626.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 622.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 622.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 622.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 620.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 620.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 620.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 617.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 612.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 609.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 608.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 607.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 606.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 604.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 602.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 602.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 600.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 596.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 595.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 592.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 592.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 591.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 586.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 582.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 582.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 582.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 577.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 575.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 574.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 572.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 571.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 568.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 568.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 566.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 565.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 560.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 560.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 560.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 558.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 556.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 556.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 555.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 555.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 553.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 552.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 548.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 546.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 546.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 545.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 545.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 542.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 541.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 539.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 538.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 533.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 532.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 528.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 527.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 526.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 524.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 521.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 519.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 518.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 518.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 517.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 512.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 512.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 509.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 507.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 504.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 501.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 501.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 500.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 500.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 495.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 494.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 491.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 490.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 488.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 487.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 484.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 479.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 477.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 473.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 473.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 471.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 470.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 467.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 466.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 464.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 458.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 452.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 444.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 440.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 436.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 434.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 432.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 427.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 426.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 413.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 387.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 358.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 310.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

328.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 328.2
FF:10164-103B2 76 years, female 328.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.6
Pig sample Sample description nTPM
Caudate
nTPM: 0.6
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.8
Sample D Male 1.6

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