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RPS23
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  • RPS23
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1099.7 nTPM
HPA Brain:322.1 nTPM
GTEx:1099.7 nTPM
FANTOM5:324.8 Scaled Tags Per Million
Pig:0.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

322.1
Sample id Sample description nTPM
Amygdala
nTPM: 322.1
2695 Female, age 67, right hemisphere 453.6
2514 Male, age 75, right hemisphere 304.1
2814 Male, age 76, right hemisphere 292.7
2517 Female, age 94, left hemisphere 291.6
1987 Female, age 91, left hemisphere 268.7
Basal amygdala
nTPM: 270.0
2827 Female, age 67, right hemisphere 376.2
2609 Male, age 75, right hemisphere 315.0
2685 Female, age 94, left hemisphere 261.4
2110 Male, age 80, left hemisphere 253.5
2243 Female, age 91, right hemisphere 212.3
1955 Male, age 76, both hemispheres 201.4
Central amygdala
nTPM: 296.7
2826 Female, age 94, left hemisphere 500.4
2515 Male, age 75, right hemisphere 302.3
1905 Male, age 76, both hemispheres 262.0
2239 Male, age 80, left hemisphere 214.2
2701 Female, age 91, right hemisphere 204.9
Corticomedial amygdala
nTPM: 231.8
2428 Male, age 75, right hemisphere 279.0
2829 Male, age 80, left hemisphere 254.6
2535 Female, age 67, right hemisphere 239.4
2240 Male, age 76, both hemispheres 218.5
2429 Female, age 94, left hemisphere 205.9
2242 Female, age 91, right hemisphere 193.2
Lateral amygdala
nTPM: 320.2
2830 Female, age 67, right hemisphere 497.3
2516 Male, age 75, right hemisphere 388.9
2534 Female, age 94, left hemisphere 332.4
2256 Male, age 80, left hemisphere 255.0
1883 Male, age 76, both hemispheres 239.0
2255 Female, age 91, right hemisphere 208.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1099.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1099.7
Samples: 181

Max nTPM: 3394.8
Min nTPM: 368.4
Std nTPM: 434.5
Median nTPM: 1029.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3394.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3178.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2793.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2448.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2288.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2248.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1883.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1877.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1768.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1765.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1762.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1754.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1720.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1719.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1593.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1586.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1558.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1554.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1542.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1527.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1515.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1512.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1499.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1464.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1440.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1428.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1410.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1398.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1397.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1368.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1366.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1360.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1356.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1351.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1348.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1341.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1339.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1339.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1335.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1322.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1316.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1312.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1305.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1273.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1265.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1265.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1259.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1256.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1255.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1244.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1231.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1226.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1225.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1225.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1223.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1219.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1200.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1195.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1182.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1154.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1148.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1144.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1138.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1138.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1132.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1130.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1122.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1114.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1113.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1112.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1106.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1101.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1100.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1099.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1088.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1086.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1081.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1079.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1077.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1077.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1074.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1060.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1056.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1055.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1054.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1054.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1050.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1047.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1044.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1039.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1029.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1028.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1028.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1026.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1022.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1020.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1013.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1009.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1003.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 999.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 988.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 981.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 979.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 974.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 969.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 966.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 966.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 959.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 957.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 955.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 950.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 941.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 940.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 939.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 933.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 918.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 914.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 909.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 898.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 897.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 897.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 891.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 881.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 881.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 876.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 868.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 865.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 863.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 862.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 858.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 857.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 849.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 848.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 845.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 840.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 830.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 828.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 826.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 822.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 822.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 814.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 808.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 808.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 807.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 800.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 776.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 776.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 761.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 757.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 752.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 750.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 749.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 749.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 740.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 734.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 718.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 696.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 682.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 677.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 669.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 662.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 657.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 649.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 645.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 642.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 641.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 640.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 635.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 623.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 620.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 608.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 598.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 596.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 584.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 583.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 577.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 570.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 550.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 441.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 434.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 368.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

324.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 324.8
FF:10151-102I7 76 years, female 324.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.4
Pig sample Sample description nTPM
Amygdala
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.3
Sample A Female 0.4
Sample B Female 0.3
Sample C Male 0.4
Sample D Male 0.7

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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