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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1673.3 nTPM
GTEx:1673.3 nTPM
FANTOM5:1366.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA054853
Squamous epithelial cells Medium


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1673.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1673.3
Samples: 170

Max nTPM: 3835.0
Min nTPM: 1025.3
Std nTPM: 433.0
Median nTPM: 1619.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3835.0
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 3250.4
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 2717.5
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 2680.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2622.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2548.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2500.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2420.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2418.3
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2412.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2400.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2395.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2364.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2325.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2297.0
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2281.4
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 2274.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2252.5
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 2238.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2228.5
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 2196.3
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 2175.1
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 2108.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2097.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2079.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2060.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2050.9
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2038.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2015.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2014.6
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1993.9
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1990.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1969.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1963.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1961.8
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1952.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1939.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1938.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1903.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1897.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1896.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1887.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1883.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1882.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1863.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1842.7
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1834.0
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 1834.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1831.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1831.3
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1829.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1829.6
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1821.2
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1809.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1803.4
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1799.9
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 1797.9
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1794.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1788.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1787.7
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1783.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1765.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1764.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1751.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1737.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1734.5
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1728.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1718.5
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 1715.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1709.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1692.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1691.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1684.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1681.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1678.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1676.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 1671.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1670.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1657.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1656.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1654.9
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1643.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1642.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1631.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1620.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1617.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1610.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1603.9
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1595.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1595.4
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1595.3
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1591.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1586.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1572.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1567.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1563.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1559.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1556.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1554.2
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1540.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1529.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1522.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1522.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1518.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1509.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1500.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1497.8
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1487.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1483.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1475.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1470.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1465.8
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1461.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1459.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1453.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1452.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1431.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1427.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1427.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1419.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1417.7
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1416.7
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1404.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1393.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1381.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1379.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1376.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1369.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1364.5
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1358.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1350.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1345.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1325.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1318.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1287.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1280.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1275.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1269.1
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1267.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1258.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1256.8
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1247.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1238.0
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1235.1
GTEX-1C475-0526-SM-793AC 40-49 years, female 1231.5
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1229.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1227.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1214.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1209.7
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1209.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1202.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1200.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1188.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1175.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1165.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1148.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1146.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1141.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1138.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1121.3
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1108.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1103.5
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 1093.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1088.8
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1059.3
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1056.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1048.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1034.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1033.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1025.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1366.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1366.9
FF:10204-103F6 68 years, female 1366.9

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