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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
91.8
Sample id
Sample description
nTPM
Amygdala nTPM: 46.1
1987
Female, age 91, left hemisphere
71.5
2517
Female, age 94, left hemisphere
57.2
2814
Male, age 76, right hemisphere
50.0
2514
Male, age 75, right hemisphere
33.4
2695
Female, age 67, right hemisphere
18.6
Basal amygdala nTPM: 74.0
2243
Female, age 91, right hemisphere
131.7
2110
Male, age 80, left hemisphere
122.2
2685
Female, age 94, left hemisphere
65.8
1955
Male, age 76, both hemispheres
64.3
2827
Female, age 67, right hemisphere
33.2
2609
Male, age 75, right hemisphere
26.6
Central amygdala nTPM: 48.0
2239
Male, age 80, left hemisphere
96.9
2701
Female, age 91, right hemisphere
49.2
1905
Male, age 76, both hemispheres
39.9
2515
Male, age 75, right hemisphere
29.3
2826
Female, age 94, left hemisphere
24.7
Corticomedial amygdala nTPM: 91.8
2242
Female, age 91, right hemisphere
151.6
2829
Male, age 80, left hemisphere
120.1
2240
Male, age 76, both hemispheres
93.5
2429
Female, age 94, left hemisphere
89.6
2535
Female, age 67, right hemisphere
62.2
2428
Male, age 75, right hemisphere
33.5
Lateral amygdala nTPM: 42.2
1883
Male, age 76, both hemispheres
66.5
2255
Female, age 91, right hemisphere
51.6
2534
Female, age 94, left hemisphere
48.7
2256
Male, age 80, left hemisphere
37.1
2830
Female, age 67, right hemisphere
26.4
2516
Male, age 75, right hemisphere
22.9
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
69.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 69.0
Samples: 181
Max nTPM: 212.3
Min nTPM: 8.7
Std nTPM: 39.3
Median nTPM: 61.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
212.3
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
188.2
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
177.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
172.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
166.0
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
162.4
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
159.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
157.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
155.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
155.6
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
148.8
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
148.4
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
143.2
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
143.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
140.5
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
133.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
131.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
126.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
119.3
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
113.6
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
109.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
108.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
107.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
107.3
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
105.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
104.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
103.5
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
103.2
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
103.2
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
101.6
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
101.4
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
101.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
100.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
100.8
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
96.4
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
95.5
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
95.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
94.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
94.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
91.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
91.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
91.3
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
91.2
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
91.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
91.1
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
90.7
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
88.8
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
87.8
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
87.7
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
87.5
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
86.8
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
85.0
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
84.7
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
84.0
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
83.9
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
83.4
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
83.0
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
82.6
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
82.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
79.7
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
78.3
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
77.7
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
77.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
77.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
77.0
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
75.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
75.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
75.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
73.9
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
72.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
71.7
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
71.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
71.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
71.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
70.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
69.7
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
69.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
69.0
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
68.9
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
68.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
68.4
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
67.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
64.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
64.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
64.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
64.3
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
63.8
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
63.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
63.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
62.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
61.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
61.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
61.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
61.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
61.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
59.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
59.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
59.4
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
58.4
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
58.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
57.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
56.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
56.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
56.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
55.7
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
55.7
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
55.0
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
54.2
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
53.9
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
53.5
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
53.3
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
53.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
53.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
52.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
50.8
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
50.3
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
49.0
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
48.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
47.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
47.0
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
46.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
46.3
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
46.3
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
46.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
46.2
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
46.1
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
46.0
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
45.8
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
45.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
45.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
44.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
44.7
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
43.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
43.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
42.5
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
40.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
40.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
39.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
39.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
39.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
38.6
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
38.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
38.0
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
36.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
35.6
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
34.8
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
34.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
34.3
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
33.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
31.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
31.4
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
30.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
30.3
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
29.2
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
28.8
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
28.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
28.1
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
27.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
27.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
26.6
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
26.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
25.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
25.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
24.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
24.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
23.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
21.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
20.9
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
20.4
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
19.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
18.5
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
17.3
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
16.7
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
16.3
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
15.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
15.2
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
14.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
13.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
12.1
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
10.3
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
8.7
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
174.9
Pig sample
Sample description
nTPM
Amygdala nTPM: 174.9
Samples: 4
Max nTPM: 250.7
Min nTPM: 141.0
Sample A
Female
250.7
Sample B
Female
141.0
Sample C
Male
165.4
Sample D
Male
142.6
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
149.3
Mouse sample
Sample description
nTPM
Amygdala nTPM: 149.3
Samples: 4
Max nTPM: 170.2
Min nTPM: 136.2
Sample A
Male
170.2
Sample B
Male
146.6
Sample C
Female
136.2
Sample D
Female
144.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
