BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.6 nTPM
HPA Brain:61.6 nTPM
GTEx:12.6 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Macaque:0.4 nTPM
Mouse:93.3 nTPM
Pig:197.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.2
2019 Male, age 18, unknown 34.6
1827 Male, age 72, unknown 32.2
2411 Female, age 72, unknown 31.1
1870 Female, age 42, unknown 30.9
1833 Male, age 53, unknown 24.9
2219 Male, age 76, both hemispheres 23.2
1830 Male, age 51, unknown 22.2
2828 Female, age 72, unknown 19.3
2586 Male, age 75, left hemisphere 17.9
2666 Male, age 74, left hemisphere 15.6
Dorsal raphe nucleus
nTPM: 41.9
2298 Female, age 72, unknown 66.7
2047 Male, age 72, unknown 50.8
2750 Male, age 76, both hemispheres 47.4
2016 Female, age 72, unknown 23.6
1828 Male, age 53, unknown 21.1
Inferior colliculus
nTPM: 27.5
2849 Male, age 72, unknown 30.6
2097 Female, age 72, unknown 30.2
1848 Female, age 42, unknown 27.4
1890 Male, age 53, unknown 21.6
Median raphe nucleus
nTPM: 61.6
2220 Male, age 76, midline 61.6
Periaquaductal grey, anterior
nTPM: 27.8
1795 Male, age 51, unknown 33.3
2502 Female, age 75, unknown 26.1
1947 Male, age 18, unknown 23.9
Periaquaductal grey, dorsal
nTPM: 36.9
1840 Male, age 53, unknown 50.7
2850 Male, age 76, both hemispheres 39.2
2464 Female, age 72, unknown 30.2
1831 Male, age 72, unknown 27.4
Periaquaductal grey, lateral
nTPM: 29.0
2272 Male, age 74, both hemispheres 32.8
2140 Male, age 76, both hemispheres 31.6
2053 Male, age 18, unknown 22.6
Pretectal area
nTPM: 38.5
2224 Female, age 72, unknown 67.1
1816 Male, age 51, unknown 56.2
1944 Female, age 72, unknown 55.0
1817 Female, age 42, unknown 38.7
1815 Male, age 53, unknown 38.5
2007 Male, age 72, unknown 37.7
2825 Male, age 18, unknown 30.7
2667 Female, age 75, unknown 28.7
2316 Male, age 76, right hemisphere 27.8
2273 Male, age 74, both hemispheres 22.0
2407 Male, age 75, both hemispheres 21.4
Red nucleus
nTPM: 17.2
2785 Male, age 18, unknown 29.3
2584 Male, age 75, left hemisphere 22.6
1904 Male, age 53, unknown 19.7
2725 Female, age 75, unknown 19.5
1821 Female, age 72, unknown 16.8
1954 Female, age 42, unknown 16.4
2503 Female, age 72, unknown 16.2
2227 Male, age 72, unknown 14.8
2769 Male, age 72, unknown 13.9
2588 Male, age 74, left hemisphere 13.0
2823 Male, age 76, right hemisphere 12.3
1865 Male, age 51, unknown 11.9
Substantia nigra
nTPM: 18.2
1889 Female, age 72, unknown 31.7
2241 Male, age 72, unknown 23.2
2590 Female, age 75, unknown 21.8
2665 Male, age 74, both hemispheres 21.4
2409 Female, age 72, unknown 20.3
1916 Female, age 42, unknown 19.9
1851 Male, age 51, unknown 14.0
2583 Male, age 75, right hemisphere 12.2
2699 Male, age 18, unknown 9.4
1941 Male, age 53, unknown 8.2
Superior colliculus
nTPM: 27.3
2087 Female, age 72, unknown 37.4
1796 Male, age 53, unknown 34.6
2261 Male, age 18, unknown 32.3
1839 Male, age 51, unknown 30.5
1895 Male, age 76, right hemisphere 30.4
1913 Female, age 42, unknown 24.2
2668 Female, age 75, unknown 23.5
2587 Male, age 74, left hemisphere 22.7
2664 Male, age 75, both hemispheres 21.1
1995 Male, age 72, unknown 16.5
Ventral tegmental area
nTPM: 33.2
2021 Male, age 53, unknown 59.9
2223 Female, age 72, unknown 35.1
1915 Female, age 42, unknown 28.9
1942 Male, age 51, unknown 26.3
2218 Male, age 76, both hemispheres 24.9
2410 Female, age 72, unknown 24.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.6
Samples: 183

Max nTPM: 76.4
Min nTPM: 1.4
Std nTPM: 10.9
Median nTPM: 10.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 76.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 66.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 64.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 60.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 42.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 33.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 32.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 32.7
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 32.2
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 31.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 30.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.0
FF:10158-103A5 76 years, female 24.0

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 0.4
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 0.3
Samples: 1

Max nTPM: 0.3
Min nTPM: 0.3
Sample A 0.3
Midbrain
nTPM: 0.4
Samples: 1

Max nTPM: 0.4
Min nTPM: 0.4
Sample A 0.4
Superior colliculi
nTPM: 0.0
Samples: 1

Max nTPM: 0.0
Min nTPM: 0.0
Sample A 0.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 197.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 197.9
Samples: 3

Max nTPM: 237.6
Min nTPM: 131.4
Sample A Female 224.7
Sample B Female 131.4
Sample C Male 237.6
Midbrain
nTPM: 143.4
Samples: 3

Max nTPM: 165.2
Min nTPM: 104.3
Sample B Female 165.2
Sample C Male 104.3
Sample D Male 160.7
Periaqueductal gray
nTPM: 157.8
Samples: 3

Max nTPM: 210.7
Min nTPM: 129.9
Sample B Female 132.9
Sample C Male 210.7
Sample D Male 129.9
Superior colliculi
nTPM: 86.8
Samples: 4

Max nTPM: 133.5
Min nTPM: 32.0
Sample A Female 133.5
Sample B Female 32.0
Sample C Male 70.8
Sample D Male 111.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 93.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 93.3
Samples: 4

Max nTPM: 99.8
Min nTPM: 87.6
Sample A 87.6
Sample B 99.8
Sample C 93.9
Sample D 91.9

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