A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.8
nTPM
Monaco:
2.6
nTPM
Schmiedel:
26.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.8
HPA sample
nTPM
Classical monocyte nTPM: 0.8
Samples: 6
Max nTPM: 1.5
Min nTPM: 0.1
P10809_1003
0.8
P10809_1020
0.5
P10809_1039
0.1
P10809_1058
0.7
P10809_1080
1.5
P10809_1107
1.4
Intermediate monocyte nTPM: 0.7
Samples: 6
Max nTPM: 1.6
Min nTPM: 0.0
P10809_1004
1.4
P10809_1023
0.6
P10809_1042
0.0
P10809_1061
0.0
P10809_1081
0.8
P10809_1108
1.6
Non-classical monocyte nTPM: 0.6
Samples: 5
Max nTPM: 1.4
Min nTPM: 0.2
P10809_1005
0.4
P10809_1053
0.6
P10809_1072
0.2
P10809_1082
0.2
P10809_1109
1.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.6
Monaco sample
nTPM
Classical monocyte nTPM: 2.6
Samples: 4
Max nTPM: 3.8
Min nTPM: 2.0
RHH5313_R3680
3.8
RHH5221_R3593
2.1
RHH5250_R3622
2.3
RHH5279_R3651
2.0
Intermediate monocyte nTPM: 2.1
Samples: 4
Max nTPM: 3.9
Min nTPM: 0.4
RHH5314_R3681
2.6
RHH5222_R3594
3.9
RHH5251_R3623
1.3
RHH5280_R3652
0.4
Non-classical monocyte nTPM: 1.4
Samples: 4
Max nTPM: 2.6
Min nTPM: 0.1
RHH5315_R3682
2.6
RHH5223_R3595
0.1
RHH5252_R3624
1.8
RHH5281_R3653
1.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.0
Schmiedel sample id
TPM
Classical monocyte TPM: 21.3
Samples: 91
Max TPM: 27.6
Min TPM: 13.9
MONOCYTES_1
27.6
MONOCYTES_2
26.8
MONOCYTES_3
26.3
MONOCYTES_4
26.3
MONOCYTES_5
26.1
MONOCYTES_6
25.8
MONOCYTES_7
25.4
MONOCYTES_8
24.8
MONOCYTES_9
24.8
MONOCYTES_10
24.3
MONOCYTES_11
24.3
MONOCYTES_12
24.0
MONOCYTES_13
24.0
MONOCYTES_14
23.8
MONOCYTES_15
23.8
MONOCYTES_16
23.8
MONOCYTES_17
23.3
MONOCYTES_18
23.3
MONOCYTES_19
23.3
MONOCYTES_20
23.2
MONOCYTES_21
23.2
MONOCYTES_22
23.2
MONOCYTES_23
23.2
MONOCYTES_24
23.2
MONOCYTES_25
23.1
MONOCYTES_26
23.1
MONOCYTES_27
23.1
MONOCYTES_28
23.1
MONOCYTES_29
23.1
MONOCYTES_30
23.0
MONOCYTES_31
23.0
MONOCYTES_32
22.8
MONOCYTES_33
22.6
MONOCYTES_34
22.6
MONOCYTES_35
22.5
MONOCYTES_36
22.5
MONOCYTES_37
22.5
MONOCYTES_38
22.2
MONOCYTES_39
22.0
MONOCYTES_40
22.0
MONOCYTES_41
21.8
MONOCYTES_42
21.7
MONOCYTES_43
21.7
MONOCYTES_44
21.6
MONOCYTES_45
21.5
MONOCYTES_46
21.4
MONOCYTES_47
21.4
MONOCYTES_48
21.4
MONOCYTES_49
21.2
MONOCYTES_50
21.1
MONOCYTES_51
21.1
MONOCYTES_52
21.0
MONOCYTES_53
21.0
MONOCYTES_54
21.0
MONOCYTES_55
20.8
MONOCYTES_56
20.8
MONOCYTES_57
20.8
MONOCYTES_58
20.6
MONOCYTES_59
20.6
MONOCYTES_60
20.5
MONOCYTES_61
20.5
MONOCYTES_62
20.3
MONOCYTES_63
20.1
MONOCYTES_64
20.1
MONOCYTES_65
19.9
MONOCYTES_66
19.9
MONOCYTES_67
19.8
MONOCYTES_68
19.8
MONOCYTES_69
19.5
MONOCYTES_70
19.5
MONOCYTES_71
19.0
MONOCYTES_72
19.0
MONOCYTES_73
18.9
MONOCYTES_74
18.9
MONOCYTES_75
18.8
MONOCYTES_76
18.7
MONOCYTES_77
18.6
MONOCYTES_78
18.5
MONOCYTES_79
18.4
MONOCYTES_80
17.8
MONOCYTES_81
17.7
MONOCYTES_82
17.5
MONOCYTES_83
17.5
MONOCYTES_84
17.2
MONOCYTES_85
17.1
MONOCYTES_86
17.1
MONOCYTES_87
16.8
MONOCYTES_88
15.6
MONOCYTES_89
15.4
MONOCYTES_90
15.2
MONOCYTES_91
13.9
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Non-classical monocyte TPM: 25.9
Samples: 90
Max TPM: 35.4
Min TPM: 15.8
M2_1
35.4
M2_2
33.2
M2_3
32.8
M2_4
31.8
M2_5
31.8
M2_6
31.1
M2_7
31.1
M2_8
31.1
M2_9
30.7
M2_10
30.5
M2_11
30.5
M2_12
30.4
M2_13
30.2
M2_14
30.1
M2_15
30.0
M2_16
29.7
M2_17
29.6
M2_18
29.6
M2_19
29.5
M2_20
29.2
M2_21
29.1
M2_22
29.1
M2_23
29.0
M2_24
28.7
M2_25
28.7
M2_26
28.6
M2_27
28.5
M2_28
28.4
M2_29
28.4
M2_30
28.4
M2_31
28.3
M2_32
28.2
M2_33
28.1
M2_34
28.0
M2_35
27.9
M2_36
27.9
M2_37
27.9
M2_38
27.6
M2_39
27.5
M2_40
27.3
M2_41
27.3
M2_42
27.2
M2_43
27.1
M2_44
27.0
M2_45
26.8
M2_46
26.7
M2_47
26.6
M2_48
26.6
M2_49
26.5
M2_50
26.1
M2_51
26.1
M2_52
25.6
M2_53
25.4
M2_54
25.2
M2_55
25.2
M2_56
25.1
M2_57
25.1
M2_58
24.8
M2_59
24.5
M2_60
24.5
M2_61
24.4
M2_62
24.2
M2_63
23.9
M2_64
23.8
M2_65
23.7
M2_66
23.6
M2_67
23.5
M2_68
23.1
M2_69
22.9
M2_70
22.3
M2_71
22.0
M2_72
22.0
M2_73
22.0
M2_74
21.8
M2_75
21.3
M2_76
21.2
M2_77
21.1
M2_78
21.0
M2_79
20.8
M2_80
20.3
M2_81
20.2
M2_82
20.1
M2_83
20.0
M2_84
19.9
M2_85
19.3
M2_86
18.5
M2_87
17.4
M2_88
16.1
M2_89
15.9
M2_90
15.8
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