MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1026.0 nTPM
HPA Brain:460.2 nTPM
GTEx:1026.0 nTPM
FANTOM5:558.2 Scaled Tags Per Million
Pig:464.6 nTPM
Mouse:402.8 nTPM
Allen mouse:12.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 460.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 314.8
2019 Male, age 18, unknown 639.8
2586 Male, age 75, left hemisphere 526.9
2828 Female, age 72, unknown 327.2
1833 Male, age 53, unknown 288.8
1830 Male, age 51, unknown 264.0
1827 Male, age 72, unknown 254.5
2411 Female, age 72, unknown 252.9
1870 Female, age 42, unknown 246.7
2666 Male, age 74, left hemisphere 209.3
2219 Male, age 76, both hemispheres 138.0
Dorsal raphe nucleus
nTPM: 366.6
1828 Male, age 53, unknown 481.7
2047 Male, age 72, unknown 406.1
2016 Female, age 72, unknown 363.7
2750 Male, age 76, both hemispheres 302.1
2298 Female, age 72, unknown 279.6
Inferior colliculus
nTPM: 274.5
1848 Female, age 42, unknown 309.2
2097 Female, age 72, unknown 295.0
1890 Male, age 53, unknown 251.6
2849 Male, age 72, unknown 242.1
Median raphe nucleus
nTPM: 339.2
2220 Male, age 76, midline 339.2
Periaquaductal grey, anterior
nTPM: 299.0
2502 Female, age 75, unknown 392.2
1795 Male, age 51, unknown 299.5
1947 Male, age 18, unknown 205.3
Periaquaductal grey, dorsal
nTPM: 292.1
2850 Male, age 76, both hemispheres 467.6
2464 Female, age 72, unknown 293.9
1840 Male, age 53, unknown 228.4
1831 Male, age 72, unknown 178.3
Periaquaductal grey, lateral
nTPM: 340.5
2140 Male, age 76, both hemispheres 460.5
2272 Male, age 74, both hemispheres 320.8
2053 Male, age 18, unknown 240.3
Pretectal area
nTPM: 316.2
2273 Male, age 74, both hemispheres 445.0
2316 Male, age 76, right hemisphere 390.5
1817 Female, age 42, unknown 385.9
1944 Female, age 72, unknown 341.9
2667 Female, age 75, unknown 341.4
1816 Male, age 51, unknown 318.6
2007 Male, age 72, unknown 304.0
2224 Female, age 72, unknown 289.5
1815 Male, age 53, unknown 254.0
2407 Male, age 75, both hemispheres 208.8
2825 Male, age 18, unknown 198.7
Red nucleus
nTPM: 392.0
1821 Female, age 72, unknown 538.6
2503 Female, age 72, unknown 484.9
2227 Male, age 72, unknown 471.2
2785 Male, age 18, unknown 437.6
2769 Male, age 72, unknown 431.8
1954 Female, age 42, unknown 422.4
2725 Female, age 75, unknown 367.1
2823 Male, age 76, right hemisphere 346.2
1865 Male, age 51, unknown 330.1
1904 Male, age 53, unknown 324.7
2588 Male, age 74, left hemisphere 301.5
2584 Male, age 75, left hemisphere 248.3
Substantia nigra
nTPM: 460.2
1916 Female, age 42, unknown 650.3
2699 Male, age 18, unknown 610.2
1851 Male, age 51, unknown 585.6
2241 Male, age 72, unknown 552.0
2409 Female, age 72, unknown 516.3
2590 Female, age 75, unknown 432.2
2665 Male, age 74, both hemispheres 343.4
1889 Female, age 72, unknown 340.3
1941 Male, age 53, unknown 310.3
2583 Male, age 75, right hemisphere 261.7
Superior colliculus
nTPM: 274.8
1796 Male, age 53, unknown 417.1
2664 Male, age 75, both hemispheres 345.4
1839 Male, age 51, unknown 308.4
2087 Female, age 72, unknown 292.5
2587 Male, age 74, left hemisphere 287.4
1995 Male, age 72, unknown 268.2
1913 Female, age 42, unknown 227.1
2261 Male, age 18, unknown 224.9
1895 Male, age 76, right hemisphere 188.9
2668 Female, age 75, unknown 187.9
Ventral tegmental area
nTPM: 384.0
2021 Male, age 53, unknown 472.7
2410 Female, age 72, unknown 434.0
1915 Female, age 42, unknown 424.2
2218 Male, age 76, both hemispheres 373.6
2223 Female, age 72, unknown 310.3
1942 Male, age 51, unknown 289.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1026.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1026.0
Samples: 183

Max nTPM: 4685.3
Min nTPM: 82.4
Std nTPM: 904.8
Median nTPM: 765.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 4685.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 4227.5
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 4199.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 3999.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 3995.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 3461.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 3448.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 2820.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 2778.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 2774.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2693.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 558.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 558.2
FF:10158-103A5 76 years, female 558.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 464.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 442.7
Samples: 4

Max nTPM: 531.0
Min nTPM: 357.2
Sample A Female 455.6
Sample B Female 531.0
Sample C Male 357.2
Sample D Male 427.0
Midbrain
nTPM: 464.7
Samples: 4

Max nTPM: 648.3
Min nTPM: 346.8
Sample A Female 415.9
Sample B Female 648.3
Sample C Male 447.6
Sample D Male 346.8
Periaqueductal gray
nTPM: 423.1
Samples: 3

Max nTPM: 561.6
Min nTPM: 322.7
Sample B Female 561.6
Sample C Male 385.1
Sample D Male 322.7
Superior colliculi
nTPM: 427.2
Samples: 4

Max nTPM: 510.1
Min nTPM: 294.6
Sample A Female 510.1
Sample B Female 294.6
Sample C Male 470.1
Sample D Male 434.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 402.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 402.9
Samples: 4

Max nTPM: 512.8
Min nTPM: 306.2
Sample A Male 512.8
Sample B Male 306.2
Sample C Female 366.5
Sample D Female 425.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.5
67767450 Antisense, RP_040916_01_H10, Mouse strain C57BL/6J (56 days, male) 12.5

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