We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MT1X
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • MT1X
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:351.4 nTPM
HPA Brain:371.2 nTPM
GTEx:351.4 nTPM
FANTOM5:1890.6 Scaled Tags Per Million
Pig:606.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

371.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 268.4
1981 Female, age 72, midline 396.7
2565 Male, age 75, midline 290.8
2048 Male, age 55, midline 268.6
2194 Female, age 79, both hemispheres 198.1
2816 Male, age 47, midline 187.7
Cervical spinal cord, dorsal horn
nTPM: 224.7
2173 Female, age 72, unknown 368.8
2297 Male, age 75, both hemispheres 236.9
2069 Male, age 47, both hemispheres 219.1
2721 Male, age 90, both hemispheres 193.3
1877 Male, age 55, unknown 177.6
2296 Male, age 66, both hemispheres 152.5
Cervical spinal cord, ventral horn
nTPM: 371.2
2480 Male, age 75, both hemispheres 624.0
2809 Male, age 90, both hemispheres 427.0
2295 Male, age 66, both hemispheres 409.4
2098 Female, age 72, unknown 361.2
2068 Male, age 55, unknown 226.3
2820 Female, age 79, both hemispheres 179.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

351.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 351.4
Samples: 204

Max nTPM: 4861.5
Min nTPM: 49.6
Std nTPM: 478.3
Median nTPM: 189.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 4861.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 2336.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1977.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1716.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1561.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1405.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 1343.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1262.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1249.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1081.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1015.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 998.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 997.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 984.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 916.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 915.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 904.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 902.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 872.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 867.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 832.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 804.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 764.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 734.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 723.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 706.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 697.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 693.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 688.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 660.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 591.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 589.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 574.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 567.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 556.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 547.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 543.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 536.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 513.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 502.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 492.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 492.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 486.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 484.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 484.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 479.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 474.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 442.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 425.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 425.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 423.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 423.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 420.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 413.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 408.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 404.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 397.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 391.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 386.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 386.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 384.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 372.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 358.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 335.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 334.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 329.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 328.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 317.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 316.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 315.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 308.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 285.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 285.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 284.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 282.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 272.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 269.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 266.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 262.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 258.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 255.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 248.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 245.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 244.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 242.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 232.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 229.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 227.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 221.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 219.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 218.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 217.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 216.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 207.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 201.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 201.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 199.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 198.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 196.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 195.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 194.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 192.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 187.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 182.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 178.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 177.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 169.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 168.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 167.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 165.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 165.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 160.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 155.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 154.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 150.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 149.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 148.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 147.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 147.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 147.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 147.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 146.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 146.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 145.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 143.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 139.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 138.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 138.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 136.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 128.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 127.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 126.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 125.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 124.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 122.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 120.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 120.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 119.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 119.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 119.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 116.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 115.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 115.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 114.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 114.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 113.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 113.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 113.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 110.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 108.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 107.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 105.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 103.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 103.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 102.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 101.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 101.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 99.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 98.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 98.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 97.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 97.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 94.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 93.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 92.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 90.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 90.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 89.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 86.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 86.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 82.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 81.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 80.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 79.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 78.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 78.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 76.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 76.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 76.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 75.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 74.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 73.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 73.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 73.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 73.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 72.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 70.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 68.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 68.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 68.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 67.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 67.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 66.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 64.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 64.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 61.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 60.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 59.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 59.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 56.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 55.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 54.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 50.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 49.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1890.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1890.6
FF:10181-103D1 60 years, female 2839.6
FF:10159-103A6 76 years, female 941.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

606.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 390.0
Samples: 4

Max nTPM: 557.7
Min nTPM: 315.9
Sample A Female 315.9
Sample B Female 557.7
Sample C Male 367.5
Sample D Male 318.7
Ventral spinal cord
nTPM: 606.1
Samples: 4

Max nTPM: 780.2
Min nTPM: 408.5
Sample A Female 495.2
Sample B Female 780.2
Sample C Male 740.3
Sample D Male 408.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo