MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:968.9 nTPM
HPA Brain:962.2 nTPM
GTEx:968.9 nTPM
FANTOM5:38.3 Scaled Tags Per Million
Pig:693.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 962.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 746.2
1830 Male, age 51, unknown 919.1
1833 Male, age 53, unknown 888.5
1870 Female, age 42, unknown 844.3
2666 Male, age 74, left hemisphere 833.8
2019 Male, age 18, unknown 793.8
2828 Female, age 72, unknown 747.2
2411 Female, age 72, unknown 641.9
1827 Male, age 72, unknown 624.5
2219 Male, age 76, both hemispheres 595.4
2586 Male, age 75, left hemisphere 573.9
Dorsal raphe nucleus
nTPM: 584.2
2750 Male, age 76, both hemispheres 728.2
2016 Female, age 72, unknown 702.3
1828 Male, age 53, unknown 598.0
2298 Female, age 72, unknown 461.2
2047 Male, age 72, unknown 431.1
Inferior colliculus
nTPM: 578.4
2849 Male, age 72, unknown 694.0
1890 Male, age 53, unknown 565.5
1848 Female, age 42, unknown 554.2
2097 Female, age 72, unknown 500.1
Median raphe nucleus
nTPM: 702.5
2220 Male, age 76, midline 702.5
Periaquaductal grey, anterior
nTPM: 627.9
2502 Female, age 75, unknown 742.4
1947 Male, age 18, unknown 614.3
1795 Male, age 51, unknown 527.0
Periaquaductal grey, dorsal
nTPM: 573.9
2850 Male, age 76, both hemispheres 802.5
1831 Male, age 72, unknown 561.7
2464 Female, age 72, unknown 539.4
1840 Male, age 53, unknown 392.1
Periaquaductal grey, lateral
nTPM: 615.9
2140 Male, age 76, both hemispheres 651.4
2272 Male, age 74, both hemispheres 635.8
2053 Male, age 18, unknown 560.5
Pretectal area
nTPM: 586.6
2316 Male, age 76, right hemisphere 736.2
1815 Male, age 53, unknown 718.7
1817 Female, age 42, unknown 651.7
2825 Male, age 18, unknown 636.8
2407 Male, age 75, both hemispheres 628.7
2007 Male, age 72, unknown 567.0
2273 Male, age 74, both hemispheres 555.1
2224 Female, age 72, unknown 520.7
2667 Female, age 75, unknown 513.4
1816 Male, age 51, unknown 466.2
1944 Female, age 72, unknown 458.0
Red nucleus
nTPM: 962.2
2503 Female, age 72, unknown 1188.2
2725 Female, age 75, unknown 1108.0
1865 Male, age 51, unknown 1060.9
1904 Male, age 53, unknown 1004.8
2823 Male, age 76, right hemisphere 1004.3
1821 Female, age 72, unknown 988.6
2227 Male, age 72, unknown 974.6
1954 Female, age 42, unknown 946.8
2769 Male, age 72, unknown 914.7
2785 Male, age 18, unknown 865.2
2588 Male, age 74, left hemisphere 813.8
2584 Male, age 75, left hemisphere 676.2
Substantia nigra
nTPM: 589.9
2699 Male, age 18, unknown 797.4
1889 Female, age 72, unknown 629.7
2665 Male, age 74, both hemispheres 614.1
1851 Male, age 51, unknown 606.4
1916 Female, age 42, unknown 578.8
2590 Female, age 75, unknown 551.7
1941 Male, age 53, unknown 549.0
2409 Female, age 72, unknown 537.8
2241 Male, age 72, unknown 525.9
2583 Male, age 75, right hemisphere 508.1
Superior colliculus
nTPM: 662.7
1913 Female, age 42, unknown 991.5
1995 Male, age 72, unknown 952.2
1839 Male, age 51, unknown 696.6
2587 Male, age 74, left hemisphere 696.5
1895 Male, age 76, right hemisphere 629.6
1796 Male, age 53, unknown 609.7
2668 Female, age 75, unknown 554.5
2664 Male, age 75, both hemispheres 514.6
2087 Female, age 72, unknown 494.9
2261 Male, age 18, unknown 486.8
Ventral tegmental area
nTPM: 624.3
2223 Female, age 72, unknown 755.4
2218 Male, age 76, both hemispheres 653.3
1915 Female, age 42, unknown 618.1
2021 Male, age 53, unknown 607.5
1942 Male, age 51, unknown 583.2
2410 Female, age 72, unknown 528.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 968.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 968.9
Samples: 183

Max nTPM: 2407.9
Min nTPM: 302.9
Std nTPM: 343.7
Median nTPM: 904.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 2407.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2133.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1925.8
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1824.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1813.1
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1803.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1759.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1713.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1652.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1640.6
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1618.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.3
FF:10158-103A5 76 years, female 38.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 693.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 693.7
Samples: 4

Max nTPM: 802.2
Min nTPM: 555.1
Sample A Female 793.7
Sample B Female 623.9
Sample C Male 555.1
Sample D Male 802.2
Midbrain
nTPM: 652.2
Samples: 4

Max nTPM: 1080.9
Min nTPM: 384.5
Sample A Female 1080.9
Sample B Female 697.8
Sample C Male 384.5
Sample D Male 445.5
Periaqueductal gray
nTPM: 584.2
Samples: 3

Max nTPM: 600.8
Min nTPM: 562.1
Sample B Female 600.8
Sample C Male 589.7
Sample D Male 562.1
Superior colliculi
nTPM: 654.8
Samples: 4

Max nTPM: 884.5
Min nTPM: 554.8
Sample A Female 884.5
Sample B Female 554.8
Sample C Male 569.9
Sample D Male 609.8

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