We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PTMA
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • PTMA
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1222.3 nTPM
HPA Brain:859.6 nTPM
GTEx:1222.3 nTPM
FANTOM5:48.9 Scaled Tags Per Million
Pig:739.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

859.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 666.4
1981 Female, age 72, midline 697.4
2194 Female, age 79, both hemispheres 687.9
2048 Male, age 55, midline 676.5
2565 Male, age 75, midline 653.8
2816 Male, age 47, midline 616.2
Cervical spinal cord, dorsal horn
nTPM: 675.2
2296 Male, age 66, both hemispheres 727.6
2173 Female, age 72, unknown 726.3
2297 Male, age 75, both hemispheres 681.1
2069 Male, age 47, both hemispheres 673.9
1877 Male, age 55, unknown 641.7
2721 Male, age 90, both hemispheres 600.4
Cervical spinal cord, ventral horn
nTPM: 859.6
2809 Male, age 90, both hemispheres 1028.3
2480 Male, age 75, both hemispheres 942.2
2295 Male, age 66, both hemispheres 922.9
2068 Male, age 55, unknown 814.5
2098 Female, age 72, unknown 782.9
2820 Female, age 79, both hemispheres 667.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1222.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1222.3
Samples: 204

Max nTPM: 2016.7
Min nTPM: 491.5
Std nTPM: 242.2
Median nTPM: 1193.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 2016.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1932.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1832.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1759.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1686.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1684.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1677.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1666.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1658.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1654.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1643.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1643.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1640.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1630.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1629.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1622.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1605.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1602.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1589.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1588.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1566.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1565.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1555.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1549.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1543.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1540.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1532.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1513.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1493.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1480.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1471.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1468.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1467.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1462.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1461.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1459.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1456.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1443.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1438.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1424.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1407.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1404.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1402.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1399.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1398.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1387.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1385.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1376.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1374.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1370.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1366.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1364.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1361.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1358.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1352.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1341.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1340.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1336.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1335.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1331.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1330.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1329.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1327.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1325.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1325.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1321.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1319.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1314.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1310.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1309.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1306.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1300.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1299.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1298.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1295.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1284.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1277.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1274.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1269.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1268.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1254.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1254.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1250.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 1248.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1242.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1241.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1238.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1234.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1233.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1229.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1227.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1226.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1222.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1216.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1213.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1212.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1210.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1205.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1204.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1200.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1196.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1196.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1189.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1189.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1187.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1187.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1185.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1184.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1179.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 1178.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1167.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1162.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1157.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1155.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1152.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1151.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1150.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1150.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1149.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1144.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1139.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1139.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 1139.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1138.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1136.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1133.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1130.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 1123.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1121.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1117.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1117.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 1114.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1114.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1113.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1107.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1102.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1101.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1099.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1088.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 1085.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 1084.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1081.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1076.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1073.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1072.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 1070.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1068.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1063.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1063.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1060.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1059.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1057.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1056.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1052.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1049.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1035.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1035.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1034.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1029.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1028.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1027.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1024.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1022.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 1019.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1015.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1015.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1014.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 1010.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1009.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1007.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1006.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 999.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 992.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 985.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 983.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 978.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 958.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 957.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 956.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 954.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 953.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 949.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 946.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 944.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 943.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 939.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 932.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 926.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 919.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 919.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 914.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 913.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 902.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 901.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 899.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 893.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 864.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 863.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 862.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 857.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 845.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 622.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 565.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 491.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

48.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 48.9
FF:10181-103D1 60 years, female 52.9
FF:10159-103A6 76 years, female 44.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

739.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 739.2
Samples: 4

Max nTPM: 849.2
Min nTPM: 638.8
Sample A Female 643.2
Sample B Female 825.6
Sample C Male 849.2
Sample D Male 638.8
Ventral spinal cord
nTPM: 679.1
Samples: 4

Max nTPM: 753.8
Min nTPM: 585.9
Sample A Female 585.9
Sample B Female 686.7
Sample C Male 689.9
Sample D Male 753.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo