MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:123.7 nTPM
HPA Brain:269.8 nTPM
GTEx:123.7 nTPM
FANTOM5:138.7 Scaled Tags Per Million
Pig:80.6 nTPM
Mouse:79.3 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 269.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 187.3
1830 Male, age 51, unknown 248.4
2411 Female, age 72, unknown 247.2
2019 Male, age 18, unknown 228.6
1833 Male, age 53, unknown 215.3
1870 Female, age 42, unknown 214.8
2828 Female, age 72, unknown 161.4
2666 Male, age 74, left hemisphere 161.1
2586 Male, age 75, left hemisphere 149.5
1827 Male, age 72, unknown 125.1
2219 Male, age 76, both hemispheres 121.6
Dorsal raphe nucleus
nTPM: 142.9
2750 Male, age 76, both hemispheres 259.6
1828 Male, age 53, unknown 135.4
2047 Male, age 72, unknown 118.6
2016 Female, age 72, unknown 116.2
2298 Female, age 72, unknown 84.5
Inferior colliculus
nTPM: 106.8
1890 Male, age 53, unknown 119.8
1848 Female, age 42, unknown 113.5
2849 Male, age 72, unknown 98.6
2097 Female, age 72, unknown 95.4
Median raphe nucleus
nTPM: 162.1
2220 Male, age 76, midline 162.1
Periaquaductal grey, anterior
nTPM: 125.0
2502 Female, age 75, unknown 138.8
1947 Male, age 18, unknown 133.8
1795 Male, age 51, unknown 102.5
Periaquaductal grey, dorsal
nTPM: 89.7
2464 Female, age 72, unknown 128.0
1831 Male, age 72, unknown 102.5
2850 Male, age 76, both hemispheres 69.8
1840 Male, age 53, unknown 58.5
Periaquaductal grey, lateral
nTPM: 108.8
2272 Male, age 74, both hemispheres 120.3
2053 Male, age 18, unknown 120.0
2140 Male, age 76, both hemispheres 86.3
Pretectal area
nTPM: 118.0
2316 Male, age 76, right hemisphere 194.6
1815 Male, age 53, unknown 149.4
2407 Male, age 75, both hemispheres 138.4
2007 Male, age 72, unknown 123.7
1817 Female, age 42, unknown 122.8
2825 Male, age 18, unknown 121.0
2273 Male, age 74, both hemispheres 106.5
2667 Female, age 75, unknown 102.8
2224 Female, age 72, unknown 94.4
1944 Female, age 72, unknown 73.1
1816 Male, age 51, unknown 71.4
Red nucleus
nTPM: 269.8
1904 Male, age 53, unknown 335.5
1865 Male, age 51, unknown 321.4
2823 Male, age 76, right hemisphere 301.0
2769 Male, age 72, unknown 296.7
2227 Male, age 72, unknown 288.8
1821 Female, age 72, unknown 286.2
2503 Female, age 72, unknown 274.7
2588 Male, age 74, left hemisphere 272.1
2785 Male, age 18, unknown 241.6
1954 Female, age 42, unknown 218.0
2584 Male, age 75, left hemisphere 209.6
2725 Female, age 75, unknown 192.2
Substantia nigra
nTPM: 145.8
2583 Male, age 75, right hemisphere 193.3
2590 Female, age 75, unknown 187.3
1851 Male, age 51, unknown 168.9
2409 Female, age 72, unknown 154.1
1889 Female, age 72, unknown 144.9
1941 Male, age 53, unknown 131.7
2699 Male, age 18, unknown 129.1
2665 Male, age 74, both hemispheres 124.5
2241 Male, age 72, unknown 115.9
1916 Female, age 42, unknown 108.4
Superior colliculus
nTPM: 142.9
1913 Female, age 42, unknown 230.4
1995 Male, age 72, unknown 187.7
2587 Male, age 74, left hemisphere 155.4
1839 Male, age 51, unknown 152.6
1895 Male, age 76, right hemisphere 148.5
2668 Female, age 75, unknown 143.4
1796 Male, age 53, unknown 117.6
2664 Male, age 75, both hemispheres 105.9
2261 Male, age 18, unknown 103.6
2087 Female, age 72, unknown 83.8
Ventral tegmental area
nTPM: 203.1
2223 Female, age 72, unknown 391.4
2410 Female, age 72, unknown 223.6
2218 Male, age 76, both hemispheres 165.9
1942 Male, age 51, unknown 165.7
2021 Male, age 53, unknown 153.3
1915 Female, age 42, unknown 118.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 123.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 123.7
Samples: 183

Max nTPM: 473.6
Min nTPM: 18.6
Std nTPM: 76.4
Median nTPM: 106.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 473.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 453.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 408.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 330.1
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 325.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 305.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 300.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 290.4
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 276.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 270.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 258.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 138.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.7
FF:10158-103A5 76 years, female 138.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 80.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 68.8
Samples: 4

Max nTPM: 98.7
Min nTPM: 38.0
Sample A Female 70.2
Sample B Female 38.0
Sample C Male 68.2
Sample D Male 98.7
Midbrain
nTPM: 80.6
Samples: 4

Max nTPM: 189.6
Min nTPM: 37.5
Sample A Female 189.6
Sample B Female 52.8
Sample C Male 42.5
Sample D Male 37.5
Periaqueductal gray
nTPM: 43.4
Samples: 3

Max nTPM: 46.0
Min nTPM: 40.1
Sample B Female 44.2
Sample C Male 40.1
Sample D Male 46.0
Superior colliculi
nTPM: 48.7
Samples: 4

Max nTPM: 60.9
Min nTPM: 25.1
Sample A Female 50.8
Sample B Female 25.1
Sample C Male 60.9
Sample D Male 57.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 79.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.3
Samples: 4

Max nTPM: 92.4
Min nTPM: 66.2
Sample A Male 68.8
Sample B Male 66.2
Sample C Female 92.4
Sample D Female 89.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
947 Antisense, RP_Baylor_103028, Mouse strain C57BL/6J (56 days, male) 0.2
945 Antisense, RP_Baylor_103028, Mouse strain C57BL/6J (56 days, male) 0.1
949 Sense, RPS_Baylor_37042, Mouse strain C57BL/6J (56 days, male) 0.0

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