BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:121.9 nTPM
HPA Brain:230.9 nTPM
GTEx:121.9 nTPM
FANTOM5:253.5 Scaled Tags Per Million
Macaque:113.7 nTPM
Mouse:97.0 nTPM
Rat:89.9 nTPM
Pig:116.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 230.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 189.9
2019 Male, age 18, unknown 273.3
2411 Female, age 72, unknown 229.9
2219 Male, age 76, both hemispheres 197.1
2828 Female, age 72, unknown 185.6
1827 Male, age 72, unknown 185.3
2586 Male, age 75, left hemisphere 183.0
1833 Male, age 53, unknown 167.7
1870 Female, age 42, unknown 167.7
1830 Male, age 51, unknown 157.7
2666 Male, age 74, left hemisphere 152.0
Dorsal raphe nucleus
nTPM: 196.8
2298 Female, age 72, unknown 246.6
2750 Male, age 76, both hemispheres 203.7
1828 Male, age 53, unknown 195.5
2047 Male, age 72, unknown 170.3
2016 Female, age 72, unknown 167.7
Inferior colliculus
nTPM: 200.9
2097 Female, age 72, unknown 268.8
1890 Male, age 53, unknown 250.3
1848 Female, age 42, unknown 157.8
2849 Male, age 72, unknown 126.9
Median raphe nucleus
nTPM: 173.1
2220 Male, age 76, midline 173.1
Periaquaductal grey, anterior
nTPM: 187.7
2502 Female, age 75, unknown 193.5
1795 Male, age 51, unknown 189.4
1947 Male, age 18, unknown 180.2
Periaquaductal grey, dorsal
nTPM: 164.0
1831 Male, age 72, unknown 178.7
2850 Male, age 76, both hemispheres 172.8
2464 Female, age 72, unknown 166.0
1840 Male, age 53, unknown 138.5
Periaquaductal grey, lateral
nTPM: 191.5
2272 Male, age 74, both hemispheres 258.7
2140 Male, age 76, both hemispheres 174.6
2053 Male, age 18, unknown 141.1
Pretectal area
nTPM: 230.9
1817 Female, age 42, unknown 329.4
2007 Male, age 72, unknown 312.6
1816 Male, age 51, unknown 296.1
1815 Male, age 53, unknown 276.4
1944 Female, age 72, unknown 271.0
2273 Male, age 74, both hemispheres 241.0
2667 Female, age 75, unknown 199.6
2224 Female, age 72, unknown 194.6
2316 Male, age 76, right hemisphere 162.3
2825 Male, age 18, unknown 137.9
2407 Male, age 75, both hemispheres 118.7
Red nucleus
nTPM: 226.5
2785 Male, age 18, unknown 276.1
1821 Female, age 72, unknown 275.0
2725 Female, age 75, unknown 271.9
2503 Female, age 72, unknown 250.7
1904 Male, age 53, unknown 248.4
1954 Female, age 42, unknown 228.3
2823 Male, age 76, right hemisphere 221.8
1865 Male, age 51, unknown 217.4
2769 Male, age 72, unknown 215.4
2227 Male, age 72, unknown 213.5
2588 Male, age 74, left hemisphere 153.5
2584 Male, age 75, left hemisphere 145.7
Substantia nigra
nTPM: 224.6
1916 Female, age 42, unknown 379.6
1889 Female, age 72, unknown 268.5
1851 Male, age 51, unknown 264.5
2241 Male, age 72, unknown 258.2
2409 Female, age 72, unknown 240.8
2699 Male, age 18, unknown 199.6
1941 Male, age 53, unknown 195.3
2583 Male, age 75, right hemisphere 166.3
2590 Female, age 75, unknown 151.6
2665 Male, age 74, both hemispheres 121.8
Superior colliculus
nTPM: 183.1
2087 Female, age 72, unknown 237.2
2261 Male, age 18, unknown 229.7
2668 Female, age 75, unknown 219.9
1913 Female, age 42, unknown 191.5
1796 Male, age 53, unknown 188.6
1995 Male, age 72, unknown 177.8
2587 Male, age 74, left hemisphere 175.4
1895 Male, age 76, right hemisphere 160.0
1839 Male, age 51, unknown 144.3
2664 Male, age 75, both hemispheres 106.6
Ventral tegmental area
nTPM: 223.7
2410 Female, age 72, unknown 308.6
2218 Male, age 76, both hemispheres 270.5
1915 Female, age 42, unknown 248.1
1942 Male, age 51, unknown 193.3
2223 Female, age 72, unknown 161.3
2021 Male, age 53, unknown 160.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 121.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 121.9
Samples: 183

Max nTPM: 303.4
Min nTPM: 32.8
Std nTPM: 45.4
Median nTPM: 116.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 303.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 300.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 268.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 253.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 237.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 211.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 209.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 201.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 198.7
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 197.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 194.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 253.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 253.5
FF:10158-103A5 76 years, female 253.5

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 113.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 113.7
Samples: 1

Max nTPM: 113.7
Min nTPM: 113.7
Sample A 113.7
Midbrain
nTPM: 61.4
Samples: 1

Max nTPM: 61.4
Min nTPM: 61.4
Sample A 61.4
Superior colliculi
nTPM: 102.3
Samples: 1

Max nTPM: 102.3
Min nTPM: 102.3
Sample A 102.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 116.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 92.3
Samples: 3

Max nTPM: 107.9
Min nTPM: 61.6
Sample A Female 107.5
Sample B Female 61.6
Sample C Male 107.9
Midbrain
nTPM: 116.6
Samples: 3

Max nTPM: 190.9
Min nTPM: 67.0
Sample B Female 67.0
Sample C Male 190.9
Sample D Male 91.8
Periaqueductal gray
nTPM: 68.4
Samples: 3

Max nTPM: 72.7
Min nTPM: 61.2
Sample B Female 71.3
Sample C Male 72.7
Sample D Male 61.2
Superior colliculi
nTPM: 111.5
Samples: 4

Max nTPM: 165.8
Min nTPM: 72.7
Sample A Female 102.3
Sample B Female 72.7
Sample C Male 165.8
Sample D Male 105.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 97.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 97.0
Samples: 4

Max nTPM: 103.3
Min nTPM: 88.6
Sample A 88.6
Sample B 95.4
Sample C 103.3
Sample D 100.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 89.9
Rat sample Sample description nTPM
Midbrain
nTPM: 89.9
Samples: 4

Max nTPM: 92.5
Min nTPM: 86.7
Sample A 92.4
Sample A 88.1
Sample A 92.5
Sample A 86.7

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