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  • PRKAR1B
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:152.8 nTPM
HPA Brain:268.1 nTPM
GTEx:152.8 nTPM
FANTOM5:86.9 Scaled Tags Per Million
Pig:97.0 nTPM
Mouse:647.7 nTPM
Allen mouse:31.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.1
Sample id Sample description nTPM
Amygdala
nTPM: 190.9
2814 Male, age 76, right hemisphere 292.1
1987 Female, age 91, left hemisphere 211.6
2517 Female, age 94, left hemisphere 205.3
2514 Male, age 75, right hemisphere 133.0
2695 Female, age 67, right hemisphere 112.8
Basal amygdala
nTPM: 240.0
2685 Female, age 94, left hemisphere 324.3
2243 Female, age 91, right hemisphere 300.3
1955 Male, age 76, both hemispheres 239.0
2110 Male, age 80, left hemisphere 211.1
2827 Female, age 67, right hemisphere 182.8
2609 Male, age 75, right hemisphere 182.5
Central amygdala
nTPM: 268.1
2826 Female, age 94, left hemisphere 445.1
1905 Male, age 76, both hemispheres 250.0
2701 Female, age 91, right hemisphere 248.4
2239 Male, age 80, left hemisphere 215.8
2515 Male, age 75, right hemisphere 181.4
Corticomedial amygdala
nTPM: 221.8
2242 Female, age 91, right hemisphere 297.4
2829 Male, age 80, left hemisphere 273.8
2429 Female, age 94, left hemisphere 223.3
2535 Female, age 67, right hemisphere 197.2
2240 Male, age 76, both hemispheres 175.7
2428 Male, age 75, right hemisphere 163.3
Lateral amygdala
nTPM: 239.7
2534 Female, age 94, left hemisphere 484.6
1883 Male, age 76, both hemispheres 247.3
2255 Female, age 91, right hemisphere 224.8
2256 Male, age 80, left hemisphere 220.3
2830 Female, age 67, right hemisphere 132.9
2516 Male, age 75, right hemisphere 128.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 152.8
Samples: 181

Max nTPM: 540.1
Min nTPM: 38.8
Std nTPM: 80.8
Median nTPM: 130.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 540.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 419.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 388.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 384.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 370.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 360.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 311.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 301.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 299.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 284.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 283.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 283.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 275.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 271.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 270.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 260.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 257.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 257.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 256.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 254.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 254.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 247.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 245.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 242.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 242.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 239.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 236.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 236.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 236.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 235.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 232.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 232.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 231.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 229.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 224.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 217.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 215.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 211.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 210.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 209.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 208.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 207.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 206.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 202.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 201.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 200.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 200.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 197.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 193.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 193.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 191.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 185.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 185.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 184.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 182.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 175.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 174.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 173.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 168.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 167.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 167.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 165.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 164.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 164.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 163.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 161.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 157.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 156.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 155.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 155.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 154.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 151.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 147.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 147.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 145.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 145.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 144.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 144.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 143.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 142.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 142.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 140.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 140.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 140.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 140.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 138.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 138.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 134.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 133.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 132.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 130.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 130.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 129.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 128.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 128.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 127.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 127.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 127.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 125.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 124.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 124.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 123.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 122.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 122.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 121.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 120.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 119.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 118.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 117.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 116.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 115.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 115.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 114.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 112.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 111.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 110.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 109.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 108.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 108.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 107.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 106.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 105.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 105.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 105.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 104.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 103.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 103.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 102.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 102.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 99.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 99.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 97.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 97.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 97.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 96.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 93.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 92.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 92.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 91.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 91.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 89.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 89.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 86.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 86.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 85.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 85.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 82.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 81.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 80.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 80.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 79.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 79.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 78.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 78.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 78.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 77.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 77.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 75.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 74.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 74.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 71.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 69.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 69.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 68.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 68.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 67.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 67.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 63.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 62.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 59.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 59.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 55.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 55.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 54.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 51.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 51.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 51.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 50.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 45.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 41.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 38.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 86.9
FF:10151-102I7 76 years, female 86.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.0
Pig sample Sample description nTPM
Amygdala
nTPM: 97.0
Samples: 4

Max nTPM: 136.4
Min nTPM: 66.8
Sample A Female 136.4
Sample B Female 66.8
Sample C Male 94.5
Sample D Male 90.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

647.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 647.7
Samples: 4

Max nTPM: 687.1
Min nTPM: 616.8
Sample A Male 687.1
Sample B Male 616.8
Sample C Female 663.7
Sample D Female 623.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

31.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 31.5
564653 Antisense, RP_040826_01_B10, Mouse strain C57BL/6J (56 days, male) 31.7
70616006 Antisense, RP_050725_01_D09, Mouse strain C57BL/6J (56 days, male) 31.3

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