MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1678.8 nTPM
HPA Brain:529.5 nTPM
GTEx:1678.8 nTPM
FANTOM5:0.1 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 529.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 265.6
2219 Male, age 76, both hemispheres 1145.8
2828 Female, age 72, unknown 249.6
2666 Male, age 74, left hemisphere 190.8
1833 Male, age 53, unknown 182.0
1830 Male, age 51, unknown 181.1
1870 Female, age 42, unknown 165.2
2019 Male, age 18, unknown 160.0
2411 Female, age 72, unknown 157.1
2586 Male, age 75, left hemisphere 128.2
1827 Male, age 72, unknown 96.4
Dorsal raphe nucleus
nTPM: 256.3
2298 Female, age 72, unknown 766.2
1828 Male, age 53, unknown 165.3
2016 Female, age 72, unknown 146.1
2750 Male, age 76, both hemispheres 130.9
2047 Male, age 72, unknown 73.0
Inferior colliculus
nTPM: 141.6
1890 Male, age 53, unknown 193.3
1848 Female, age 42, unknown 149.9
2849 Male, age 72, unknown 117.1
2097 Female, age 72, unknown 106.1
Median raphe nucleus
nTPM: 247.7
2220 Male, age 76, midline 247.7
Periaquaductal grey, anterior
nTPM: 131.7
2502 Female, age 75, unknown 169.7
1795 Male, age 51, unknown 134.4
1947 Male, age 18, unknown 91.1
Periaquaductal grey, dorsal
nTPM: 151.0
1831 Male, age 72, unknown 274.0
2850 Male, age 76, both hemispheres 149.0
2464 Female, age 72, unknown 115.5
1840 Male, age 53, unknown 65.4
Periaquaductal grey, lateral
nTPM: 104.8
2272 Male, age 74, both hemispheres 132.4
2053 Male, age 18, unknown 99.7
2140 Male, age 76, both hemispheres 82.4
Pretectal area
nTPM: 129.2
1817 Female, age 42, unknown 183.0
1816 Male, age 51, unknown 157.3
2007 Male, age 72, unknown 153.0
2825 Male, age 18, unknown 146.9
2667 Female, age 75, unknown 138.1
1815 Male, age 53, unknown 127.5
2316 Male, age 76, right hemisphere 120.8
2224 Female, age 72, unknown 116.1
2273 Male, age 74, both hemispheres 114.5
1944 Female, age 72, unknown 106.2
2407 Male, age 75, both hemispheres 57.9
Red nucleus
nTPM: 230.6
1904 Male, age 53, unknown 406.7
2227 Male, age 72, unknown 287.1
2769 Male, age 72, unknown 286.1
1821 Female, age 72, unknown 278.7
2503 Female, age 72, unknown 241.0
2823 Male, age 76, right hemisphere 214.5
2588 Male, age 74, left hemisphere 213.0
1865 Male, age 51, unknown 208.5
2785 Male, age 18, unknown 172.6
2725 Female, age 75, unknown 168.2
1954 Female, age 42, unknown 157.3
2584 Male, age 75, left hemisphere 134.2
Substantia nigra
nTPM: 233.7
2665 Male, age 74, both hemispheres 440.8
2699 Male, age 18, unknown 430.3
1851 Male, age 51, unknown 286.2
1916 Female, age 42, unknown 236.0
2241 Male, age 72, unknown 234.5
2409 Female, age 72, unknown 164.4
1941 Male, age 53, unknown 159.0
1889 Female, age 72, unknown 149.9
2590 Female, age 75, unknown 133.5
2583 Male, age 75, right hemisphere 101.8
Superior colliculus
nTPM: 161.5
2587 Male, age 74, left hemisphere 310.7
2668 Female, age 75, unknown 204.2
1796 Male, age 53, unknown 183.9
1995 Male, age 72, unknown 178.4
1895 Male, age 76, right hemisphere 155.1
1913 Female, age 42, unknown 148.8
2261 Male, age 18, unknown 137.6
1839 Male, age 51, unknown 136.9
2087 Female, age 72, unknown 117.0
2664 Male, age 75, both hemispheres 42.1
Ventral tegmental area
nTPM: 529.5
2218 Male, age 76, both hemispheres 1015.5
1915 Female, age 42, unknown 763.7
2021 Male, age 53, unknown 439.8
2223 Female, age 72, unknown 371.8
1942 Male, age 51, unknown 320.3
2410 Female, age 72, unknown 265.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1678.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1678.8
Samples: 183

Max nTPM: 29098.9
Min nTPM: 44.7
Std nTPM: 2888.5
Median nTPM: 835.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 29098.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 16406.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 10230.3
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 9937.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 9006.2
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 7543.4
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 6594.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 6296.2
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 5396.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 5345.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 5272.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.1
FF:10158-103A5 76 years, female 0.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo