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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
720.3
nTPM
HPA Brain:
178.9
nTPM
GTEx:
720.3
nTPM
FANTOM5:
0.0
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA043780
Antibody CAB038417
Glial cells
Low
Not detected
Neuronal cells
High
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
178.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 178.9
1911
Female, age 85, right hemisphere
289.9
2148
Female, age 91, left hemisphere
200.5
1898
Male, age 80, left hemisphere
166.8
2529
Female, age 94, left hemisphere
163.6
2621
Female, age 67, right hemisphere
159.6
1855
Male, age 76, left hemisphere
93.0
Dentate gyrus nTPM: 146.8
2246
Female, age 85, both hemispheres
192.9
2531
Female, age 67, both hemispheres
182.8
2528
Male, age 74, both hemispheres
154.8
2530
Female, age 94, left hemisphere
125.3
2010
Male, age 76, both hemispheres
120.0
1927
Female, age 91, both hemispheres
104.9
Entorhinal gyrus nTPM: 134.4
1938
Female, age 85, left hemisphere
171.5
2686
Male, age 75, right hemisphere
157.0
2613
Female, age 94, left hemisphere
146.1
1787
Male, age 76, left hemisphere
145.9
2117
Female, age 91, right hemisphere
122.3
2764
Male, age 80, right hemisphere
63.4
Hippocampus, CA1 nTPM: 120.8
2527
Male, age 74, both hemispheres
183.5
1873
Female, age 85, both hemispheres
121.6
2749
Male, age 80, left hemisphere
121.5
2082
Female, age 91, right hemisphere
111.8
2045
Male, age 76, both hemispheres
65.7
Hippocampus, CA2 nTPM: 148.3
2437
Female, age 94, left hemisphere
219.9
1963
Male, age 80, left hemisphere
208.1
1940
Female, age 85, left hemisphere
140.5
2113
Female, age 91, right hemisphere
129.6
1892
Male, age 76, both hemispheres
128.4
2249
Male, age 74, both hemispheres
63.4
Hippocampus, CA3 nTPM: 169.4
2861
Female, age 67, both hemispheres
295.9
1891
Female, age 85, both hemispheres
237.9
2620
Female, age 94, left hemisphere
177.0
1867
Male, age 76, both hemispheres
151.8
2137
Male, age 80, left hemisphere
84.3
2436
Male, age 74, both hemispheres
69.6
Parahippocampal cortex nTPM: 130.5
2532
Female, age 72, left hemisphere
213.2
2622
Female, age 67, right hemisphere
179.3
2245
Female, age 91, both hemispheres
158.0
2018
Male, age 76, both hemispheres
132.5
2250
Female, age 67, right hemisphere
128.1
1933
Female, age 85, both hemispheres
121.8
1990
Female, age 91, right hemisphere
120.6
2692
Male, age 74, both hemispheres
103.7
1850
Male, age 80, both hemispheres
96.2
2693
Female, age 94, both hemispheres
51.4
Perirhinal gyrus nTPM: 121.7
2521
Female, age 94, right hemisphere
153.3
1794
Male, age 80, right hemisphere
121.8
2848
Male, age 76, right hemisphere
118.5
1847
Female, age 91, left hemisphere
109.9
1841
Female, age 85, right hemisphere
105.1
Subiculum nTPM: 127.2
1977
Female, age 85, both hemispheres
210.8
2042
Male, age 76, both hemispheres
138.7
2438
Female, age 94, left hemisphere
133.9
2619
Male, age 74, both hemispheres
126.9
1901
Male, age 80, both hemispheres
81.1
2729
Female, age 91, right hemisphere
72.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
720.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 720.3
Samples: 197
Max nTPM: 9095.2
Min nTPM: 26.3
Std nTPM: 1051.7
Median nTPM: 422.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
9095.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
7893.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
4798.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
3898.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
3651.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
3275.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
2567.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
2426.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
2227.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
2167.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
2156.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
2097.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
1877.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
1850.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
1804.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
1710.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
1670.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
1606.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
1600.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
1508.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
1382.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
1380.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
1327.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
1206.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
1201.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
1165.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
1142.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
1142.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
1133.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
1118.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
1084.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
1081.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
1061.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
1044.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
1013.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
1005.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
973.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
969.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
945.5
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
934.6
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
925.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
923.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
906.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
904.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
901.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
894.3
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
892.6
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
866.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
857.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
853.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
849.8
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
834.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
822.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
816.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
815.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
811.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
805.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
781.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
769.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
765.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
746.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
746.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
723.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
720.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
697.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
684.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
683.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
679.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
663.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
658.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
656.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
656.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
653.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
633.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
615.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
605.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
588.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
586.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
583.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
581.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
562.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
541.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
536.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
534.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
516.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
507.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
499.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
498.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
483.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
476.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
469.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
462.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
458.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
457.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
445.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
432.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
424.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
424.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
422.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
413.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
409.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
408.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
402.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
400.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
390.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
385.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
382.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
372.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
365.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
360.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
357.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
355.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
351.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
333.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
331.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
327.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
327.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
327.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
320.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
319.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
307.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
303.1
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
301.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
300.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
298.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
295.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
282.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
278.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
271.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
268.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
266.9
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
263.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
262.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
256.1
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
254.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
251.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
234.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
232.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
225.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
225.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
217.3
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
216.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
214.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
213.5
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
212.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
207.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
200.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
199.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
199.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
196.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
196.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
190.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
186.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
181.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
175.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
172.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
165.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
165.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
163.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
162.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
158.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
157.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
155.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
148.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
145.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
144.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
141.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
137.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
135.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
135.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
129.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
128.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
126.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
123.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
114.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
104.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
104.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
104.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
90.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
90.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
76.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
76.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
69.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
67.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
67.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
67.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
66.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
62.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
60.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
57.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
55.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
52.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
44.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
39.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
30.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
28.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
26.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.