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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:159.2 nTPM
HPA:159.2 nTPM
GTEx:130.9 nTPM
FANTOM5:172.3 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA042123Antibody HPA048064Antibody CAB037314
Glandular cells MediumNot detectedMedium






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.2
overview
Male, age 65
Small intestine sample 232
nTPM: 172.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 142.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 154.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 166.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 130.9
Samples: 207

Max nTPM: 236.7
Min nTPM: 74.0
Std nTPM: 24.2
Median nTPM: 127.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 236.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 233.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 203.9
GTEX-1192X-2526-SM-59868 50-59 years, male 200.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 193.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 191.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 188.1
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 187.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 183.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 177.5
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 177.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 176.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 172.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 168.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 167.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 165.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 164.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 163.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 162.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 161.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 161.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 158.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 158.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 158.5
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 157.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 156.5
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 155.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 154.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 153.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 153.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 153.4
GTEX-178AV-1226-SM-GOR11 40-49 years, male 152.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 150.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 150.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 149.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 148.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 148.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 147.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 146.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 145.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 145.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 145.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 144.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 144.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 144.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 143.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 143.8
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 143.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 143.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 142.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 141.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 141.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 140.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 140.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 140.4
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 140.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 140.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 140.0
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 140.0
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 139.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 139.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 138.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 138.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 138.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 138.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 137.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 136.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 136.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 136.8
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 135.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 135.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 135.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 135.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 134.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 134.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 133.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 133.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 133.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 133.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 133.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 133.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 132.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 132.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 132.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 131.9
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 131.8
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 131.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 131.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 130.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 130.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 130.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 130.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 129.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 129.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 129.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 129.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 129.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 128.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 127.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 127.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 127.6
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 127.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 127.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 127.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 126.9
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 126.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 126.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 126.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 125.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 125.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 125.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 125.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 125.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 125.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 125.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 125.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 124.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 124.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 124.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 124.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 123.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 123.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 123.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 122.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 122.9
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 122.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 122.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 122.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 122.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 122.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 122.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 121.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 121.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 121.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 121.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 120.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 120.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 119.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 119.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 119.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 119.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 119.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 118.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 118.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 117.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 117.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 117.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 117.0
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 116.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 116.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 116.4
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 116.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 116.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 115.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 115.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 115.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 114.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 114.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 114.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 114.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 113.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 113.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 113.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 113.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 113.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 113.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 112.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 112.2
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 112.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 112.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 111.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 111.6
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 111.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 111.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 110.7
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 110.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 110.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 109.6
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 109.3
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 108.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 108.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 108.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 107.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 106.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 106.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 105.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 105.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 104.0
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 103.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 103.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 102.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 100.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 99.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 99.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 98.7
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 97.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 97.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 97.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 96.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 94.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 94.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 92.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 92.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 91.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 88.7
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 85.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 74.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

172.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 172.3
FF:10024-101D6 15,40,85 years, mixed 172.3

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