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  • NDUFA4
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:335.7 nTPM
HPA Brain:77.9 nTPM
GTEx:335.7 nTPM
FANTOM5:774.5 Scaled Tags Per Million
Pig:387.1 nTPM
Mouse:917.3 nTPM
Allen mouse:4.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.9
Sample id Sample description nTPM
Amygdala
nTPM: 77.9
2814 Male, age 76, right hemisphere 101.6
2517 Female, age 94, left hemisphere 80.7
2514 Male, age 75, right hemisphere 79.2
1987 Female, age 91, left hemisphere 70.7
2695 Female, age 67, right hemisphere 57.1
Basal amygdala
nTPM: 66.0
2609 Male, age 75, right hemisphere 76.0
2110 Male, age 80, left hemisphere 73.3
2685 Female, age 94, left hemisphere 69.3
1955 Male, age 76, both hemispheres 67.5
2243 Female, age 91, right hemisphere 67.1
2827 Female, age 67, right hemisphere 42.8
Central amygdala
nTPM: 70.7
1905 Male, age 76, both hemispheres 91.3
2515 Male, age 75, right hemisphere 75.1
2826 Female, age 94, left hemisphere 71.6
2239 Male, age 80, left hemisphere 64.6
2701 Female, age 91, right hemisphere 50.7
Corticomedial amygdala
nTPM: 74.6
2429 Female, age 94, left hemisphere 97.6
2829 Male, age 80, left hemisphere 95.3
2428 Male, age 75, right hemisphere 76.4
2242 Female, age 91, right hemisphere 72.2
2240 Male, age 76, both hemispheres 63.7
2535 Female, age 67, right hemisphere 42.4
Lateral amygdala
nTPM: 65.4
2516 Male, age 75, right hemisphere 96.0
1883 Male, age 76, both hemispheres 77.7
2534 Female, age 94, left hemisphere 70.7
2255 Female, age 91, right hemisphere 51.4
2830 Female, age 67, right hemisphere 49.4
2256 Male, age 80, left hemisphere 47.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

335.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 335.7
Samples: 181

Max nTPM: 1478.9
Min nTPM: 133.4
Std nTPM: 154.6
Median nTPM: 305.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1478.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 890.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 842.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 777.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 716.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 713.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 664.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 650.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 634.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 625.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 601.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 549.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 522.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 522.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 512.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 505.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 502.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 493.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 480.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 478.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 477.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 473.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 465.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 461.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 459.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 455.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 450.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 448.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 435.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 433.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 426.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 426.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 419.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 407.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 405.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 401.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 400.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 396.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 396.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 391.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 391.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 390.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 388.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 383.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 373.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 371.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 370.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 370.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 367.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 367.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 367.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 365.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 365.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 365.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 364.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 357.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 354.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 354.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 351.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 348.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 348.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 347.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 345.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 344.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 344.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 343.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 342.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 342.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 342.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 340.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 334.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 333.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 332.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 331.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 325.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 325.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 324.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 321.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 319.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 317.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 317.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 316.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 315.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 313.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 309.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 309.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 308.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 307.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 307.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 306.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 305.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 304.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 303.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 302.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 301.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 300.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 299.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 298.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 297.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 297.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 297.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 293.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 292.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 289.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 288.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 288.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 286.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 286.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 286.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 281.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 281.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 278.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 278.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 276.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 275.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 275.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 274.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 272.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 271.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 266.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 263.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 263.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 261.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 260.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 257.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 256.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 256.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 253.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 250.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 249.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 248.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 247.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 247.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 246.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 243.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 241.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 241.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 237.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 237.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 234.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 233.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 232.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 232.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 232.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 231.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 228.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 227.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 224.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 222.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 222.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 222.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 218.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 216.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 213.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 212.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 209.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 208.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 208.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 207.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 206.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 202.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 200.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 200.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 199.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 193.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 189.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 188.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 187.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 184.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 182.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 182.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 179.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 173.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 173.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 166.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 166.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 164.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 154.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 149.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 149.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 133.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

774.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 774.5
FF:10151-102I7 76 years, female 774.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

387.1
Pig sample Sample description nTPM
Amygdala
nTPM: 387.1
Samples: 4

Max nTPM: 515.5
Min nTPM: 280.2
Sample A Female 515.5
Sample B Female 389.7
Sample C Male 363.0
Sample D Male 280.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

917.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 917.3
Samples: 4

Max nTPM: 993.6
Min nTPM: 873.2
Sample A Male 880.4
Sample B Male 922.0
Sample C Female 993.6
Sample D Female 873.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.9
69782139 Antisense, RP_050505_02_D07, Mouse strain C57BL/6J (56 days, male) 4.9

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