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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1607.8 nTPM
HPA Brain:662.1 nTPM
GTEx:1607.8 nTPM
FANTOM5:3033.8 Scaled Tags Per Million
Pig:5150.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

662.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 523.3
1981 Female, age 72, midline 672.6
2816 Male, age 47, midline 564.0
2194 Female, age 79, both hemispheres 477.7
2048 Male, age 55, midline 468.2
2565 Male, age 75, midline 434.1
Cervical spinal cord, dorsal horn
nTPM: 662.1
2296 Male, age 66, both hemispheres 1176.4
2173 Female, age 72, unknown 890.9
2069 Male, age 47, both hemispheres 562.3
1877 Male, age 55, unknown 499.4
2721 Male, age 90, both hemispheres 450.6
2297 Male, age 75, both hemispheres 393.0
Cervical spinal cord, ventral horn
nTPM: 523.2
2098 Female, age 72, unknown 704.4
2068 Male, age 55, unknown 558.5
2820 Female, age 79, both hemispheres 530.2
2480 Male, age 75, both hemispheres 494.0
2809 Male, age 90, both hemispheres 429.1
2295 Male, age 66, both hemispheres 423.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1607.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1607.8
Samples: 204

Max nTPM: 9537.0
Min nTPM: 398.8
Std nTPM: 877.2
Median nTPM: 1503.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 9537.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 6566.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 5151.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 3465.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2914.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2910.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2882.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2792.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2646.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2630.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 2555.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 2548.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 2507.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 2497.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2475.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 2457.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2431.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2374.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 2369.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 2313.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 2282.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 2268.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2229.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2155.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 2120.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 2116.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2109.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 2104.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 2087.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 2073.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2070.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 2065.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 2063.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2036.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2027.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1945.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1940.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1920.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1919.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1917.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1917.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1911.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1898.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1897.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1897.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1887.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1883.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 1879.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1865.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1864.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1864.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1848.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1845.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1831.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1820.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1816.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1808.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1807.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1802.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1800.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1794.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1781.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 1770.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1770.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1752.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1751.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1750.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1744.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1739.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1730.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1720.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1716.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1702.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1676.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1671.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1671.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1661.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1659.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1658.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1648.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1641.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1638.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1629.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1624.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1620.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1606.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1605.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1597.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1597.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1592.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1570.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1561.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1558.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1554.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1551.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 1544.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1544.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1542.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1531.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1525.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1518.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1515.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1490.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1489.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1480.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1447.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1441.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1432.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 1425.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1419.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1419.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1419.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1415.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1410.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1409.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1389.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1389.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1382.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1379.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1364.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1363.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1363.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1358.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1354.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1352.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1350.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1342.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1337.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1334.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1333.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1328.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1309.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1294.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 1294.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1290.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1277.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1274.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1270.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1262.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1250.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1245.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1239.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 1235.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1233.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1224.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1223.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1221.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1213.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1208.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1200.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1200.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1194.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1188.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1183.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1179.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1173.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 1170.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 1148.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1148.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1143.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1139.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1134.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1124.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1123.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1120.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1118.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1118.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1097.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1061.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1059.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1049.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1046.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1040.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1032.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1003.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1003.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1003.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1001.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 997.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 970.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 969.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 942.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 935.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 929.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 901.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 887.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 867.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 823.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 807.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 779.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 778.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 752.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 669.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 656.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 648.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 634.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 624.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 612.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 594.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 499.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 487.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 486.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 458.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 398.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3033.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 3033.8
FF:10181-103D1 60 years, female 3742.9
FF:10159-103A6 76 years, female 2324.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5150.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 5150.6
Samples: 4

Max nTPM: 8040.0
Min nTPM: 2819.7
Sample A Female 2819.7
Sample B Female 5124.5
Sample C Male 8040.0
Sample D Male 4618.2
Ventral spinal cord
nTPM: 4620.9
Samples: 4

Max nTPM: 5658.1
Min nTPM: 3402.5
Sample A Female 4076.4
Sample B Female 3402.5
Sample C Male 5658.1
Sample D Male 5346.6

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