On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
976.8
nTPM
HPA Brain:
690.0
nTPM
GTEx:
976.8
nTPM
FANTOM5:
3790.5
Scaled Tags Per Million
Macaque:
439.2
nTPM
Mouse:
300.9
nTPM
Rat:
618.7
nTPM
Pig:
1215.8
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
690.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 520.7
2411
Female, age 72, unknown
777.9
1830
Male, age 51, unknown
755.0
1870
Female, age 42, unknown
681.1
1833
Male, age 53, unknown
670.5
2019
Male, age 18, unknown
580.3
2828
Female, age 72, unknown
486.8
2219
Male, age 76, both hemispheres
465.0
1827
Male, age 72, unknown
360.6
2666
Male, age 74, left hemisphere
273.5
2586
Male, age 75, left hemisphere
156.5
Dorsal raphe nucleus nTPM: 420.7
2750
Male, age 76, both hemispheres
816.4
2016
Female, age 72, unknown
405.6
1828
Male, age 53, unknown
359.3
2298
Female, age 72, unknown
263.8
2047
Male, age 72, unknown
258.5
Inferior colliculus nTPM: 390.7
1890
Male, age 53, unknown
448.1
2849
Male, age 72, unknown
408.8
1848
Female, age 42, unknown
395.3
2097
Female, age 72, unknown
310.5
Median raphe nucleus nTPM: 478.6
2220
Male, age 76, midline
478.6
Periaquaductal grey, anterior nTPM: 365.7
2502
Female, age 75, unknown
538.2
1947
Male, age 18, unknown
321.1
1795
Male, age 51, unknown
237.8
Periaquaductal grey, dorsal nTPM: 324.6
2464
Female, age 72, unknown
399.3
1831
Male, age 72, unknown
338.2
2850
Male, age 76, both hemispheres
334.3
1840
Male, age 53, unknown
226.7
Periaquaductal grey, lateral nTPM: 375.6
2272
Male, age 74, both hemispheres
473.6
2053
Male, age 18, unknown
355.0
2140
Male, age 76, both hemispheres
298.1
Pretectal area nTPM: 416.4
2667
Female, age 75, unknown
603.5
1815
Male, age 53, unknown
544.3
1817
Female, age 42, unknown
477.7
2316
Male, age 76, right hemisphere
471.5
2273
Male, age 74, both hemispheres
439.4
2407
Male, age 75, both hemispheres
400.6
2007
Male, age 72, unknown
386.3
2825
Male, age 18, unknown
368.9
1944
Female, age 72, unknown
331.8
2224
Female, age 72, unknown
324.9
1816
Male, age 51, unknown
232.1
Red nucleus nTPM: 690.0
1865
Male, age 51, unknown
1013.3
1821
Female, age 72, unknown
912.0
2823
Male, age 76, right hemisphere
893.9
1904
Male, age 53, unknown
794.7
2503
Female, age 72, unknown
759.6
2227
Male, age 72, unknown
703.8
2769
Male, age 72, unknown
694.3
2785
Male, age 18, unknown
693.4
1954
Female, age 42, unknown
683.7
2588
Male, age 74, left hemisphere
422.9
2584
Male, age 75, left hemisphere
421.4
2725
Female, age 75, unknown
287.0
Substantia nigra nTPM: 468.6
2699
Male, age 18, unknown
650.5
2409
Female, age 72, unknown
584.6
2590
Female, age 75, unknown
539.4
1851
Male, age 51, unknown
535.3
1889
Female, age 72, unknown
523.4
2241
Male, age 72, unknown
449.8
2583
Male, age 75, right hemisphere
386.8
1916
Female, age 42, unknown
367.1
2665
Male, age 74, both hemispheres
327.0
1941
Male, age 53, unknown
322.2
Superior colliculus nTPM: 466.2
1913
Female, age 42, unknown
710.6
1995
Male, age 72, unknown
680.5
1895
Male, age 76, right hemisphere
623.6
2587
Male, age 74, left hemisphere
622.9
1839
Male, age 51, unknown
496.8
1796
Male, age 53, unknown
366.1
2668
Female, age 75, unknown
353.4
2087
Female, age 72, unknown
349.8
2261
Male, age 18, unknown
280.6
2664
Male, age 75, both hemispheres
178.0
Ventral tegmental area nTPM: 538.1
2223
Female, age 72, unknown
711.5
2410
Female, age 72, unknown
652.5
2218
Male, age 76, both hemispheres
557.2
2021
Male, age 53, unknown
480.6
1915
Female, age 42, unknown
434.6
1942
Male, age 51, unknown
392.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
976.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 976.8
Samples: 183
Max nTPM: 2654.8
Min nTPM: 142.1
Std nTPM: 432.7
Median nTPM: 893.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2654.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2640.0
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
2090.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1985.0
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1937.2
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1914.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1892.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1772.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
1719.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1711.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1708.4
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1695.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1681.5
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
1680.4
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1674.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1633.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1603.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1591.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
1586.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1559.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1553.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1544.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1506.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1484.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1479.6
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1468.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1437.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1430.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1407.9
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
1401.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1398.9
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1397.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1395.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1387.8
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1382.7
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
1372.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1344.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1332.7
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
1311.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
1265.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1261.0
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1249.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1239.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1231.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1230.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1212.7
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1212.6
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1197.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1186.7
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1183.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1172.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1163.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1134.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1131.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1118.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1116.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1111.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1101.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1096.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1091.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1084.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1078.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1076.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1055.9
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1049.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1041.5
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1037.7
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
1037.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
1034.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1034.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1031.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1019.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1014.5
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1007.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1000.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
997.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
996.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
989.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
988.8
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
979.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
973.0
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
970.1
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
962.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
954.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
948.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
942.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
936.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
906.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
904.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
902.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
894.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
893.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
886.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
885.6
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
884.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
882.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
882.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
881.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
875.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
874.9
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
869.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
867.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
864.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
846.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
842.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
837.4
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
828.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
826.4
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
823.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
796.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
794.9
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
788.5
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
786.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
783.7
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
781.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
762.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
758.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
741.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
738.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
736.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
734.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
731.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
727.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
724.3
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
716.4
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
708.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
705.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
702.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
702.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
698.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
698.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
692.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
678.3
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
677.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
675.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
672.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
672.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
664.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
649.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
634.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
633.9
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
633.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
633.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
632.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
629.7
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
624.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
620.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
620.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
619.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
618.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
611.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
608.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
598.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
595.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
592.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
588.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
588.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
562.0
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
555.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
546.0
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
538.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
529.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
517.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
513.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
512.8
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
497.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
496.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
493.1
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
473.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
468.5
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
455.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
436.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
422.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
400.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
391.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
369.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
344.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
321.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
312.9
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
286.5
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
270.4
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
236.1
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
142.1
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
439.2
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 137.5
Samples: 1
Max nTPM: 137.5
Min nTPM: 137.5
Sample A
137.5
Midbrain nTPM: 439.2
Samples: 1
Max nTPM: 439.2
Min nTPM: 439.2
Sample A
439.2
Superior colliculi nTPM: 111.1
Samples: 1
Max nTPM: 111.1
Min nTPM: 111.1
Sample A
111.1
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1215.8
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 1215.8
Samples: 3
Max nTPM: 1358.2
Min nTPM: 1013.9
Sample A
Female
1358.2
Sample B
Female
1013.9
Sample C
Male
1275.3
Midbrain nTPM: 809.4
Samples: 3
Max nTPM: 1150.5
Min nTPM: 526.1
Sample B
Female
1150.5
Sample C
Male
751.5
Sample D
Male
526.1
Periaqueductal gray nTPM: 764.3
Samples: 3
Max nTPM: 942.8
Min nTPM: 538.6
Sample B
Female
942.8
Sample C
Male
538.6
Sample D
Male
811.5
Superior colliculi nTPM: 1177.9
Samples: 4
Max nTPM: 1497.3
Min nTPM: 562.7
Sample A
Female
1247.2
Sample B
Female
562.7
Sample C
Male
1497.3
Sample D
Male
1404.6
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
300.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 300.9
Samples: 4
Max nTPM: 317.2
Min nTPM: 285.1
Sample A
317.2
Sample B
306.7
Sample C
294.4
Sample D
285.1
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
618.7
Rat sample
Sample description
nTPM
Midbrain nTPM: 618.8
Samples: 4
Max nTPM: 660.8
Min nTPM: 534.7
Sample A
534.7
Sample A
651.6
Sample A
660.8
Sample A
627.9
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
