MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:976.8 nTPM
HPA Brain:686.6 nTPM
GTEx:976.8 nTPM
FANTOM5:3790.5 Scaled Tags Per Million
Pig:2005.7 nTPM
Mouse:328.7 nTPM
Allen mouse:15.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 686.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 518.2
2411 Female, age 72, unknown 775.1
1830 Male, age 51, unknown 751.8
1870 Female, age 42, unknown 678.5
1833 Male, age 53, unknown 667.1
2019 Male, age 18, unknown 577.7
2828 Female, age 72, unknown 484.6
2219 Male, age 76, both hemispheres 458.4
1827 Male, age 72, unknown 358.9
2666 Male, age 74, left hemisphere 272.1
2586 Male, age 75, left hemisphere 157.8
Dorsal raphe nucleus
nTPM: 417.2
2750 Male, age 76, both hemispheres 804.9
2016 Female, age 72, unknown 403.4
1828 Male, age 53, unknown 357.5
2298 Female, age 72, unknown 262.7
2047 Male, age 72, unknown 257.4
Inferior colliculus
nTPM: 388.9
1890 Male, age 53, unknown 445.9
2849 Male, age 72, unknown 406.7
1848 Female, age 42, unknown 393.6
2097 Female, age 72, unknown 309.2
Median raphe nucleus
nTPM: 471.9
2220 Male, age 76, midline 471.9
Periaquaductal grey, anterior
nTPM: 364.1
2502 Female, age 75, unknown 535.9
1947 Male, age 18, unknown 319.7
1795 Male, age 51, unknown 236.6
Periaquaductal grey, dorsal
nTPM: 322.4
2464 Female, age 72, unknown 397.8
1831 Male, age 72, unknown 336.5
2850 Male, age 76, both hemispheres 329.5
1840 Male, age 53, unknown 225.6
Periaquaductal grey, lateral
nTPM: 372.7
2272 Male, age 74, both hemispheres 471.1
2053 Male, age 18, unknown 353.3
2140 Male, age 76, both hemispheres 293.8
Pretectal area
nTPM: 414.6
2667 Female, age 75, unknown 601.2
1815 Male, age 53, unknown 541.9
1817 Female, age 42, unknown 475.7
2316 Male, age 76, right hemisphere 464.8
2273 Male, age 74, both hemispheres 437.0
2407 Male, age 75, both hemispheres 403.7
2007 Male, age 72, unknown 384.4
2825 Male, age 18, unknown 367.1
1944 Female, age 72, unknown 330.3
2224 Female, age 72, unknown 323.5
1816 Male, age 51, unknown 231.2
Red nucleus
nTPM: 686.6
1865 Male, age 51, unknown 1008.7
1821 Female, age 72, unknown 907.9
2823 Male, age 76, right hemisphere 881.1
1904 Male, age 53, unknown 790.1
2503 Female, age 72, unknown 757.0
2227 Male, age 72, unknown 700.6
2769 Male, age 72, unknown 690.8
2785 Male, age 18, unknown 689.9
1954 Female, age 42, unknown 680.7
2584 Male, age 75, left hemisphere 424.8
2588 Male, age 74, left hemisphere 421.1
2725 Female, age 75, unknown 285.7
Substantia nigra
nTPM: 467.0
2699 Male, age 18, unknown 647.3
2409 Female, age 72, unknown 582.6
2590 Female, age 75, unknown 537.3
1851 Male, age 51, unknown 532.9
1889 Female, age 72, unknown 520.8
2241 Male, age 72, unknown 447.9
2583 Male, age 75, right hemisphere 390.2
1916 Female, age 42, unknown 365.3
2665 Male, age 74, both hemispheres 325.2
1941 Male, age 53, unknown 320.7
Superior colliculus
nTPM: 463.7
1913 Female, age 42, unknown 707.2
1995 Male, age 72, unknown 677.2
2587 Male, age 74, left hemisphere 619.8
1895 Male, age 76, right hemisphere 615.0
1839 Male, age 51, unknown 494.6
1796 Male, age 53, unknown 364.3
2668 Female, age 75, unknown 351.8
2087 Female, age 72, unknown 348.2
2261 Male, age 18, unknown 279.3
2664 Male, age 75, both hemispheres 179.3
Ventral tegmental area
nTPM: 534.7
2223 Female, age 72, unknown 708.1
2410 Female, age 72, unknown 649.7
2218 Male, age 76, both hemispheres 549.5
2021 Male, age 53, unknown 478.3
1915 Female, age 42, unknown 432.8
1942 Male, age 51, unknown 390.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 976.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 976.8
Samples: 183

Max nTPM: 2654.8
Min nTPM: 142.1
Std nTPM: 432.7
Median nTPM: 893.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2654.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2640.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2090.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1985.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1937.2
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 1914.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1892.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1772.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1719.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1711.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1708.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3790.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3790.5
FF:10158-103A5 76 years, female 3790.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 2005.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1516.5
Samples: 4

Max nTPM: 2436.1
Min nTPM: 1010.3
Sample A Female 1349.6
Sample B Female 1010.3
Sample C Male 1269.8
Sample D Male 2436.1
Midbrain
nTPM: 2005.7
Samples: 4

Max nTPM: 5602.2
Min nTPM: 525.1
Sample A Female 5602.2
Sample B Female 1146.2
Sample C Male 749.3
Sample D Male 525.1
Periaqueductal gray
nTPM: 762.5
Samples: 3

Max nTPM: 940.1
Min nTPM: 537.4
Sample B Female 940.1
Sample C Male 537.4
Sample D Male 809.9
Superior colliculi
nTPM: 1171.8
Samples: 4

Max nTPM: 1490.2
Min nTPM: 560.2
Sample A Female 1238.8
Sample B Female 560.2
Sample C Male 1490.2
Sample D Male 1397.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 328.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 328.8
Samples: 4

Max nTPM: 345.1
Min nTPM: 311.8
Sample A Male 345.1
Sample B Male 331.5
Sample C Female 326.7
Sample D Female 311.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.2
71380893 Antisense, RP_050421_01_F01, Mouse strain C57BL/6J (56 days, male) 15.2

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