BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1451.7 nTPM
HPA Brain:646.8 nTPM
GTEx:1451.7 nTPM
FANTOM5:541.2 Scaled Tags Per Million
Macaque:3.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 646.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 534.9
1827 Male, age 72, unknown 640.9
1870 Female, age 42, unknown 600.3
2411 Female, age 72, unknown 583.0
2019 Male, age 18, unknown 565.9
2666 Male, age 74, left hemisphere 559.4
1833 Male, age 53, unknown 513.5
2828 Female, age 72, unknown 511.0
2219 Male, age 76, both hemispheres 510.0
1830 Male, age 51, unknown 477.8
2586 Male, age 75, left hemisphere 386.8
Dorsal raphe nucleus
nTPM: 539.1
2298 Female, age 72, unknown 667.9
2750 Male, age 76, both hemispheres 587.4
2047 Male, age 72, unknown 552.7
1828 Male, age 53, unknown 501.2
2016 Female, age 72, unknown 386.5
Inferior colliculus
nTPM: 568.2
2097 Female, age 72, unknown 623.5
1848 Female, age 42, unknown 586.1
1890 Male, age 53, unknown 557.8
2849 Male, age 72, unknown 505.5
Median raphe nucleus
nTPM: 623.4
2220 Male, age 76, midline 623.4
Periaquaductal grey, anterior
nTPM: 578.0
1947 Male, age 18, unknown 607.5
2502 Female, age 75, unknown 598.4
1795 Male, age 51, unknown 528.0
Periaquaductal grey, dorsal
nTPM: 494.0
2850 Male, age 76, both hemispheres 555.8
1840 Male, age 53, unknown 486.2
1831 Male, age 72, unknown 478.1
2464 Female, age 72, unknown 456.0
Periaquaductal grey, lateral
nTPM: 485.2
2272 Male, age 74, both hemispheres 521.1
2053 Male, age 18, unknown 494.9
2140 Male, age 76, both hemispheres 439.5
Pretectal area
nTPM: 646.8
1944 Female, age 72, unknown 853.4
1816 Male, age 51, unknown 851.8
1817 Female, age 42, unknown 824.3
2007 Male, age 72, unknown 812.9
1815 Male, age 53, unknown 679.6
2224 Female, age 72, unknown 629.2
2273 Male, age 74, both hemispheres 551.1
2667 Female, age 75, unknown 549.6
2825 Male, age 18, unknown 475.0
2407 Male, age 75, both hemispheres 468.6
2316 Male, age 76, right hemisphere 419.3
Red nucleus
nTPM: 555.3
2725 Female, age 75, unknown 749.8
1821 Female, age 72, unknown 655.0
2785 Male, age 18, unknown 608.5
1865 Male, age 51, unknown 603.7
2503 Female, age 72, unknown 553.9
1954 Female, age 42, unknown 534.8
2823 Male, age 76, right hemisphere 532.9
2588 Male, age 74, left hemisphere 522.4
1904 Male, age 53, unknown 510.0
2769 Male, age 72, unknown 487.6
2227 Male, age 72, unknown 478.1
2584 Male, age 75, left hemisphere 427.3
Substantia nigra
nTPM: 608.3
1889 Female, age 72, unknown 838.4
1941 Male, age 53, unknown 815.3
1916 Female, age 42, unknown 729.7
1851 Male, age 51, unknown 624.0
2241 Male, age 72, unknown 612.7
2699 Male, age 18, unknown 540.9
2665 Male, age 74, both hemispheres 504.0
2590 Female, age 75, unknown 494.6
2409 Female, age 72, unknown 471.9
2583 Male, age 75, right hemisphere 451.1
Superior colliculus
nTPM: 554.4
2087 Female, age 72, unknown 678.7
2587 Male, age 74, left hemisphere 663.4
2261 Male, age 18, unknown 622.5
1895 Male, age 76, right hemisphere 586.9
1796 Male, age 53, unknown 571.1
1913 Female, age 42, unknown 560.3
2668 Female, age 75, unknown 529.0
1995 Male, age 72, unknown 485.3
1839 Male, age 51, unknown 480.3
2664 Male, age 75, both hemispheres 366.6
Ventral tegmental area
nTPM: 553.9
2218 Male, age 76, both hemispheres 683.8
1915 Female, age 42, unknown 614.5
2410 Female, age 72, unknown 600.3
2223 Female, age 72, unknown 517.4
1942 Male, age 51, unknown 481.2
2021 Male, age 53, unknown 426.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1451.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1451.7
Samples: 183

Max nTPM: 3347.5
Min nTPM: 874.2
Std nTPM: 334.6
Median nTPM: 1431.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 3347.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 3039.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 2311.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2266.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 2142.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 2112.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 2042.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2025.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 2022.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1980.8
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 1947.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 541.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 541.2
FF:10158-103A5 76 years, female 541.2

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 3.8
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 0.5
Samples: 1

Max nTPM: 0.5
Min nTPM: 0.5
Sample A 0.5
Midbrain
nTPM: 3.8
Samples: 1

Max nTPM: 3.8
Min nTPM: 3.8
Sample A 3.8
Superior colliculi
nTPM: 0.0
Samples: 1

Max nTPM: 0.0
Min nTPM: 0.0
Sample A 0.0

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