A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.3
nTPM
Monaco:
315.9
nTPM
Schmiedel:
297.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.3
HPA sample
nTPM
Classical monocyte nTPM: 11.1
Samples: 6
Max nTPM: 36.2
Min nTPM: 0.7
P10809_1003
36.2
P10809_1020
5.0
P10809_1039
0.7
P10809_1058
7.7
P10809_1080
9.8
P10809_1107
7.0
Intermediate monocyte nTPM: 16.4
Samples: 6
Max nTPM: 44.0
Min nTPM: 6.8
P10809_1004
44.0
P10809_1023
6.8
P10809_1042
12.1
P10809_1061
16.3
P10809_1081
10.1
P10809_1108
9.0
Non-classical monocyte nTPM: 21.3
Samples: 5
Max nTPM: 48.2
Min nTPM: 7.2
P10809_1005
48.2
P10809_1053
10.1
P10809_1072
33.7
P10809_1082
7.2
P10809_1109
7.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
315.9
Monaco sample
nTPM
Classical monocyte nTPM: 188.8
Samples: 4
Max nTPM: 218.1
Min nTPM: 165.7
RHH5313_R3680
165.7
RHH5221_R3593
197.8
RHH5250_R3622
218.1
RHH5279_R3651
173.5
Intermediate monocyte nTPM: 274.4
Samples: 4
Max nTPM: 363.1
Min nTPM: 207.8
RHH5314_R3681
266.4
RHH5222_R3594
363.1
RHH5251_R3623
207.8
RHH5280_R3652
260.2
Non-classical monocyte nTPM: 315.9
Samples: 4
Max nTPM: 355.9
Min nTPM: 297.9
RHH5315_R3682
307.5
RHH5223_R3595
355.9
RHH5252_R3624
297.9
RHH5281_R3653
302.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
297.4
Schmiedel sample id
TPM
Classical monocyte TPM: 201.7
Samples: 91
Max TPM: 394.6
Min TPM: 77.2
MONOCYTES_1
394.6
MONOCYTES_2
357.3
MONOCYTES_3
332.9
MONOCYTES_4
319.0
MONOCYTES_5
314.8
MONOCYTES_6
312.6
MONOCYTES_7
312.1
MONOCYTES_8
306.7
MONOCYTES_9
306.0
MONOCYTES_10
303.7
MONOCYTES_11
300.1
MONOCYTES_12
299.8
MONOCYTES_13
299.7
MONOCYTES_14
293.3
MONOCYTES_15
278.6
MONOCYTES_16
274.9
MONOCYTES_17
273.0
MONOCYTES_18
269.0
MONOCYTES_19
267.5
MONOCYTES_20
261.9
MONOCYTES_21
258.0
MONOCYTES_22
254.8
MONOCYTES_23
254.7
MONOCYTES_24
254.3
MONOCYTES_25
253.0
MONOCYTES_26
252.2
MONOCYTES_27
250.9
MONOCYTES_28
240.3
MONOCYTES_29
239.1
MONOCYTES_30
236.7
MONOCYTES_31
233.0
MONOCYTES_32
229.1
MONOCYTES_33
228.5
MONOCYTES_34
226.8
MONOCYTES_35
222.5
MONOCYTES_36
221.6
MONOCYTES_37
221.4
MONOCYTES_38
220.0
MONOCYTES_39
214.3
MONOCYTES_40
210.5
MONOCYTES_41
205.6
MONOCYTES_42
205.1
MONOCYTES_43
203.8
MONOCYTES_44
202.1
MONOCYTES_45
201.0
MONOCYTES_46
198.3
MONOCYTES_47
196.3
MONOCYTES_48
192.8
MONOCYTES_49
189.8
MONOCYTES_50
187.1
MONOCYTES_51
186.0
MONOCYTES_52
183.9
MONOCYTES_53
179.4
MONOCYTES_54
179.0
MONOCYTES_55
176.8
MONOCYTES_56
175.8
MONOCYTES_57
167.8
MONOCYTES_58
166.3
MONOCYTES_59
166.2
MONOCYTES_60
163.1
MONOCYTES_61
158.3
MONOCYTES_62
157.7
MONOCYTES_63
156.4
MONOCYTES_64
155.2
MONOCYTES_65
153.8
MONOCYTES_66
153.4
MONOCYTES_67
149.9
MONOCYTES_68
146.8
MONOCYTES_69
145.4
MONOCYTES_70
141.7
MONOCYTES_71
140.2
MONOCYTES_72
138.3
MONOCYTES_73
133.3
MONOCYTES_74
132.7
MONOCYTES_75
132.1
MONOCYTES_76
123.8
MONOCYTES_77
123.8
MONOCYTES_78
121.8
MONOCYTES_79
121.4
MONOCYTES_80
115.5
MONOCYTES_81
113.9
MONOCYTES_82
108.8
MONOCYTES_83
102.4
MONOCYTES_84
99.8
MONOCYTES_85
97.8
MONOCYTES_86
94.3
MONOCYTES_87
91.0
MONOCYTES_88
84.2
MONOCYTES_89
79.7
MONOCYTES_90
79.0
MONOCYTES_91
77.2
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Non-classical monocyte TPM: 297.4
Samples: 90
Max TPM: 605.8
Min TPM: 58.1
M2_1
605.8
M2_2
596.4
M2_3
538.5
M2_4
538.5
M2_5
512.8
M2_6
509.5
M2_7
506.2
M2_8
489.8
M2_9
489.6
M2_10
479.0
M2_11
465.8
M2_12
460.1
M2_13
455.6
M2_14
454.8
M2_15
448.9
M2_16
443.3
M2_17
440.1
M2_18
438.3
M2_19
430.0
M2_20
413.0
M2_21
411.6
M2_22
391.9
M2_23
386.4
M2_24
385.2
M2_25
384.2
M2_26
377.7
M2_27
374.2
M2_28
371.5
M2_29
366.1
M2_30
363.4
M2_31
353.8
M2_32
348.0
M2_33
347.8
M2_34
344.2
M2_35
343.5
M2_36
335.1
M2_37
334.3
M2_38
328.5
M2_39
311.1
M2_40
310.0
M2_41
307.4
M2_42
307.2
M2_43
302.9
M2_44
294.4
M2_45
291.4
M2_46
291.2
M2_47
289.4
M2_48
289.0
M2_49
272.9
M2_50
268.6
M2_51
268.2
M2_52
267.3
M2_53
266.7
M2_54
264.5
M2_55
260.3
M2_56
257.6
M2_57
257.6
M2_58
256.2
M2_59
237.2
M2_60
234.9
M2_61
232.1
M2_62
223.1
M2_63
221.4
M2_64
219.0
M2_65
204.6
M2_66
196.8
M2_67
194.4
M2_68
186.9
M2_69
186.0
M2_70
182.3
M2_71
177.9
M2_72
167.3
M2_73
163.3
M2_74
161.6
M2_75
146.7
M2_76
145.9
M2_77
122.7
M2_78
122.1
M2_79
117.8
M2_80
116.8
M2_81
113.3
M2_82
112.1
M2_83
111.1
M2_84
101.2
M2_85
99.4
M2_86
93.9
M2_87
85.0
M2_88
70.9
M2_89
61.4
M2_90
58.1
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