HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.4 nTPM
HPA Brain:72.7 nTPM
GTEx:36.4 nTPM
FANTOM5:47.5 Scaled Tags Per Million
Pig:54.2 nTPM
Mouse:59.1 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 72.7
Sample id Sample description nTPM
Hippocampus
nTPM: 64.1
1911 Female, age 85, right hemisphere 72.8
2529 Female, age 94, left hemisphere 69.2
2621 Female, age 67, right hemisphere 63.5
2148 Female, age 91, left hemisphere 63.2
1855 Male, age 76, left hemisphere 59.3
1898 Male, age 80, left hemisphere 56.7
Dentate gyrus
nTPM: 63.8
2530 Female, age 94, left hemisphere 85.2
2010 Male, age 76, both hemispheres 62.6
2531 Female, age 67, both hemispheres 61.8
2528 Male, age 74, both hemispheres 60.5
2246 Female, age 85, both hemispheres 59.0
1927 Female, age 91, both hemispheres 53.7
Entorhinal gyrus
nTPM: 61.9
2117 Female, age 91, right hemisphere 74.5
2764 Male, age 80, right hemisphere 70.0
2686 Male, age 75, right hemisphere 63.2
1787 Male, age 76, left hemisphere 55.8
1938 Female, age 85, left hemisphere 55.4
2613 Female, age 94, left hemisphere 52.4
Hippocampus, CA1
nTPM: 54.8
1873 Female, age 85, both hemispheres 63.6
2082 Female, age 91, right hemisphere 56.0
2045 Male, age 76, both hemispheres 55.7
2527 Male, age 74, both hemispheres 50.7
2749 Male, age 80, left hemisphere 47.8
Hippocampus, CA2
nTPM: 57.6
1963 Male, age 80, left hemisphere 69.5
2249 Male, age 74, both hemispheres 59.1
2437 Female, age 94, left hemisphere 59.1
2113 Female, age 91, right hemisphere 57.7
1940 Female, age 85, left hemisphere 53.0
1892 Male, age 76, both hemispheres 47.0
Hippocampus, CA3
nTPM: 56.6
1891 Female, age 85, both hemispheres 71.7
1867 Male, age 76, both hemispheres 57.7
2620 Female, age 94, left hemisphere 54.7
2861 Female, age 67, both hemispheres 54.5
2137 Male, age 80, left hemisphere 50.7
2436 Male, age 74, both hemispheres 50.6
Parahippocampal cortex
nTPM: 53.4
2018 Male, age 76, both hemispheres 69.8
2532 Female, age 72, left hemisphere 65.3
2692 Male, age 74, both hemispheres 60.3
2245 Female, age 91, both hemispheres 53.6
1933 Female, age 85, both hemispheres 53.3
1990 Female, age 91, right hemisphere 52.5
1850 Male, age 80, both hemispheres 51.5
2693 Female, age 94, both hemispheres 45.9
2622 Female, age 67, right hemisphere 42.8
2250 Female, age 67, right hemisphere 39.4
Perirhinal gyrus
nTPM: 43.9
2848 Male, age 76, right hemisphere 50.2
1794 Male, age 80, right hemisphere 43.8
1847 Female, age 91, left hemisphere 43.4
2521 Female, age 94, right hemisphere 41.6
1841 Female, age 85, right hemisphere 40.8
Subiculum
nTPM: 72.7
2042 Male, age 76, both hemispheres 95.1
1901 Male, age 80, both hemispheres 83.5
2438 Female, age 94, left hemisphere 78.2
2729 Female, age 91, right hemisphere 61.6
1977 Female, age 85, both hemispheres 59.4
2619 Male, age 74, both hemispheres 58.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 36.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 36.4
Samples: 255

Max nTPM: 130.6
Min nTPM: 6.7
Std nTPM: 17.3
Median nTPM: 32.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 130.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 96.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 94.5
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 87.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 86.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 85.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 82.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 77.4
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 75.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 70.5
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 70.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.5
FF:10153-102I9 76 years, female 62.9
FF:10169-103B7 60 years, female 32.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 54.2
Pig sample Sample description nTPM
Subiculum
nTPM: 45.1
Samples: 4

Max nTPM: 55.7
Min nTPM: 39.1
Sample A Female 55.7
Sample B Female 42.8
Sample C Male 42.9
Sample D Male 39.1
Dorsal hippocampus
nTPM: 54.2
Samples: 4

Max nTPM: 65.7
Min nTPM: 43.2
Sample A Female 65.7
Sample B Female 53.3
Sample C Male 54.6
Sample D Male 43.2
Entorhinal cortex
nTPM: 43.1
Samples: 4

Max nTPM: 46.3
Min nTPM: 40.3
Sample A Female 43.3
Sample B Female 40.3
Sample C Male 46.3
Sample D Male 42.6
Ventral hippocampus
nTPM: 46.7
Samples: 4

Max nTPM: 57.0
Min nTPM: 36.8
Sample A Female 40.9
Sample B Female 36.8
Sample C Male 51.9
Sample D Male 57.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 59.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 59.1
Samples: 4

Max nTPM: 67.9
Min nTPM: 52.5
Sample A Male 58.6
Sample B Male 52.5
Sample C Female 57.2
Sample D Female 67.9
Hippocampal formation
nTPM: 52.2
Samples: 4

Max nTPM: 53.2
Min nTPM: 51.3
Sample A Male 51.4
Sample B Male 51.3
Sample C Female 53.0
Sample D Female 53.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
71493057 Antisense, RP_050913_02_A12, Mouse strain C57BL/6J (56 days, male) 0.5

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