MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.0 nTPM
HPA Brain:130.0 nTPM
GTEx:45.0 nTPM
FANTOM5:143.0 Scaled Tags Per Million
Pig:61.0 nTPM
Mouse:43.0 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 130.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.4
1830 Male, age 51, unknown 132.7
2019 Male, age 18, unknown 127.7
2411 Female, age 72, unknown 126.2
1833 Male, age 53, unknown 118.9
1870 Female, age 42, unknown 116.0
2586 Male, age 75, left hemisphere 105.6
2828 Female, age 72, unknown 95.8
2666 Male, age 74, left hemisphere 95.2
2219 Male, age 76, both hemispheres 78.7
1827 Male, age 72, unknown 77.7
Dorsal raphe nucleus
nTPM: 82.0
2750 Male, age 76, both hemispheres 127.8
1828 Male, age 53, unknown 83.0
2016 Female, age 72, unknown 78.5
2047 Male, age 72, unknown 68.1
2298 Female, age 72, unknown 52.6
Inferior colliculus
nTPM: 73.5
1890 Male, age 53, unknown 89.6
1848 Female, age 42, unknown 74.1
2849 Male, age 72, unknown 68.6
2097 Female, age 72, unknown 61.5
Median raphe nucleus
nTPM: 76.1
2220 Male, age 76, midline 76.1
Periaquaductal grey, anterior
nTPM: 70.8
2502 Female, age 75, unknown 78.1
1947 Male, age 18, unknown 70.3
1795 Male, age 51, unknown 64.1
Periaquaductal grey, dorsal
nTPM: 58.9
2464 Female, age 72, unknown 76.8
1831 Male, age 72, unknown 65.2
2850 Male, age 76, both hemispheres 50.8
1840 Male, age 53, unknown 42.7
Periaquaductal grey, lateral
nTPM: 67.4
2053 Male, age 18, unknown 75.8
2272 Male, age 74, both hemispheres 71.1
2140 Male, age 76, both hemispheres 55.3
Pretectal area
nTPM: 73.2
2407 Male, age 75, both hemispheres 98.5
2316 Male, age 76, right hemisphere 94.6
1815 Male, age 53, unknown 88.6
2825 Male, age 18, unknown 77.2
2007 Male, age 72, unknown 75.0
2273 Male, age 74, both hemispheres 68.4
1817 Female, age 42, unknown 68.1
2667 Female, age 75, unknown 66.9
2224 Female, age 72, unknown 61.9
1944 Female, age 72, unknown 54.8
1816 Male, age 51, unknown 51.0
Red nucleus
nTPM: 130.0
1865 Male, age 51, unknown 152.4
2823 Male, age 76, right hemisphere 145.8
1904 Male, age 53, unknown 143.9
2769 Male, age 72, unknown 136.9
2785 Male, age 18, unknown 136.1
2588 Male, age 74, left hemisphere 134.7
2227 Male, age 72, unknown 134.0
1821 Female, age 72, unknown 127.2
2503 Female, age 72, unknown 122.9
2584 Male, age 75, left hemisphere 121.4
1954 Female, age 42, unknown 114.6
2725 Female, age 75, unknown 89.8
Substantia nigra
nTPM: 88.3
2583 Male, age 75, right hemisphere 109.3
2409 Female, age 72, unknown 103.8
2590 Female, age 75, unknown 98.3
1851 Male, age 51, unknown 92.8
2241 Male, age 72, unknown 85.8
2699 Male, age 18, unknown 84.9
1889 Female, age 72, unknown 83.4
1941 Male, age 53, unknown 80.2
2665 Male, age 74, both hemispheres 72.7
1916 Female, age 42, unknown 71.4
Superior colliculus
nTPM: 88.4
1913 Female, age 42, unknown 125.3
1995 Male, age 72, unknown 111.0
2668 Female, age 75, unknown 106.2
1895 Male, age 76, right hemisphere 95.9
2587 Male, age 74, left hemisphere 95.3
1839 Male, age 51, unknown 85.0
2664 Male, age 75, both hemispheres 80.7
1796 Male, age 53, unknown 68.2
2087 Female, age 72, unknown 59.6
2261 Male, age 18, unknown 56.9
Ventral tegmental area
nTPM: 97.2
2223 Female, age 72, unknown 141.5
2410 Female, age 72, unknown 105.9
1942 Male, age 51, unknown 93.9
2021 Male, age 53, unknown 86.3
2218 Male, age 76, both hemispheres 82.1
1915 Female, age 42, unknown 73.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 45.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.0
Samples: 183

Max nTPM: 133.4
Min nTPM: 13.4
Std nTPM: 21.8
Median nTPM: 40.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 133.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 129.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 125.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 123.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 99.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 91.1
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 91.0
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 89.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 85.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 84.8
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 84.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 143.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.0
FF:10158-103A5 76 years, female 143.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 61.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.3
Samples: 4

Max nTPM: 66.2
Min nTPM: 43.1
Sample A Female 60.2
Sample B Female 43.1
Sample C Male 55.7
Sample D Male 66.2
Midbrain
nTPM: 61.1
Samples: 4

Max nTPM: 89.7
Min nTPM: 47.6
Sample A Female 89.7
Sample B Female 52.7
Sample C Male 54.2
Sample D Male 47.6
Periaqueductal gray
nTPM: 44.1
Samples: 3

Max nTPM: 45.3
Min nTPM: 42.7
Sample B Female 45.3
Sample C Male 42.7
Sample D Male 44.3
Superior colliculi
nTPM: 49.7
Samples: 4

Max nTPM: 61.5
Min nTPM: 29.2
Sample A Female 52.7
Sample B Female 29.2
Sample C Male 55.2
Sample D Male 61.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 43.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.1
Samples: 4

Max nTPM: 45.4
Min nTPM: 40.9
Sample A Male 40.9
Sample B Male 41.2
Sample C Female 45.4
Sample D Female 44.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71493057 Antisense, RP_050913_02_A12, Mouse strain C57BL/6J (56 days, male) 0.3

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