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  • PCBP2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:192.9 nTPM
HPA Brain:336.6 nTPM
GTEx:192.9 nTPM
FANTOM5:1199.5 Scaled Tags Per Million
Pig:181.5 nTPM
Mouse:300.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

336.6
Sample id Sample description nTPM
Amygdala
nTPM: 336.6
2814 Male, age 76, right hemisphere 371.8
2514 Male, age 75, right hemisphere 351.5
2695 Female, age 67, right hemisphere 347.6
1987 Female, age 91, left hemisphere 314.5
2517 Female, age 94, left hemisphere 297.7
Basal amygdala
nTPM: 293.9
2609 Male, age 75, right hemisphere 371.3
2685 Female, age 94, left hemisphere 298.0
1955 Male, age 76, both hemispheres 285.3
2827 Female, age 67, right hemisphere 277.0
2110 Male, age 80, left hemisphere 267.0
2243 Female, age 91, right hemisphere 265.0
Central amygdala
nTPM: 312.4
2515 Male, age 75, right hemisphere 345.2
2826 Female, age 94, left hemisphere 324.3
1905 Male, age 76, both hemispheres 316.6
2701 Female, age 91, right hemisphere 303.3
2239 Male, age 80, left hemisphere 272.9
Corticomedial amygdala
nTPM: 281.2
2428 Male, age 75, right hemisphere 303.9
2242 Female, age 91, right hemisphere 303.8
2829 Male, age 80, left hemisphere 297.2
2240 Male, age 76, both hemispheres 279.5
2429 Female, age 94, left hemisphere 258.0
2535 Female, age 67, right hemisphere 244.5
Lateral amygdala
nTPM: 298.5
2516 Male, age 75, right hemisphere 325.5
1883 Male, age 76, both hemispheres 320.3
2255 Female, age 91, right hemisphere 311.9
2256 Male, age 80, left hemisphere 296.4
2830 Female, age 67, right hemisphere 274.2
2534 Female, age 94, left hemisphere 262.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 192.9
Samples: 181

Max nTPM: 365.4
Min nTPM: 117.2
Std nTPM: 33.8
Median nTPM: 185.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 365.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 285.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 282.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 278.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 275.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 274.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 265.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 263.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 260.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 259.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 257.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 255.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 250.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 247.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 247.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 246.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 245.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 243.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 238.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 238.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 235.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 233.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 232.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 230.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 229.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 229.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 228.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 228.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 222.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 218.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 218.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 217.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 217.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 216.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 214.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 214.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 213.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 213.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 213.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 210.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 210.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 209.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 209.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 209.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 208.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 207.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 206.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 206.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 205.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 205.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 204.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 204.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 203.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 201.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 200.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 200.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 200.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 198.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 198.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 198.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 198.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 197.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 197.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 197.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 197.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 197.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 197.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 196.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 196.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 195.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 195.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 195.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 194.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 193.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 193.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 192.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 192.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 192.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 191.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 190.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 190.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 190.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 188.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 188.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 187.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 187.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 186.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 186.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 185.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 185.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 185.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 184.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 184.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 184.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 183.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 183.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 182.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 182.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 182.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 181.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 181.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 181.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 181.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 181.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 181.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 180.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 180.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 180.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 180.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 179.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 179.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 179.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 179.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 178.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 178.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 178.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 178.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 178.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 177.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 176.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 176.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 176.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 175.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 175.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 175.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 174.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 174.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 172.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 172.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 172.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 172.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 171.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 171.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 171.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 171.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 171.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 171.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 170.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 169.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 169.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 169.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 168.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 168.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 166.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 166.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 165.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 163.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 163.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 163.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 162.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 162.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 162.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 161.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 161.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 161.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 161.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 161.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 161.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 160.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 160.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 160.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 160.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 159.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 159.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 158.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 157.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 157.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 155.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 155.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 154.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 152.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 152.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 150.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 150.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 149.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 149.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 145.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 143.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 142.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 132.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 117.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1199.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1199.5
FF:10151-102I7 76 years, female 1199.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.5
Pig sample Sample description nTPM
Amygdala
nTPM: 181.5
Samples: 4

Max nTPM: 217.6
Min nTPM: 162.0
Sample A Female 217.6
Sample B Female 182.3
Sample C Male 162.0
Sample D Male 163.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

300.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 300.2
Samples: 4

Max nTPM: 308.6
Min nTPM: 291.1
Sample A Male 303.9
Sample B Male 297.2
Sample C Female 308.6
Sample D Female 291.1

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