MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:207.0 nTPM
HPA Brain:363.2 nTPM
GTEx:207.0 nTPM
FANTOM5:1028.4 Scaled Tags Per Million
Pig:323.7 nTPM
Mouse:327.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 363.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 315.7
2019 Male, age 18, unknown 352.7
2666 Male, age 74, left hemisphere 339.0
2828 Female, age 72, unknown 328.1
1827 Male, age 72, unknown 321.8
2219 Male, age 76, both hemispheres 320.8
1870 Female, age 42, unknown 319.5
1833 Male, age 53, unknown 311.5
1830 Male, age 51, unknown 295.7
2411 Female, age 72, unknown 290.0
2586 Male, age 75, left hemisphere 277.8
Dorsal raphe nucleus
nTPM: 327.2
1828 Male, age 53, unknown 367.2
2750 Male, age 76, both hemispheres 325.8
2298 Female, age 72, unknown 321.3
2047 Male, age 72, unknown 314.1
2016 Female, age 72, unknown 307.5
Inferior colliculus
nTPM: 319.8
1890 Male, age 53, unknown 330.1
2849 Male, age 72, unknown 321.2
1848 Female, age 42, unknown 314.8
2097 Female, age 72, unknown 313.0
Median raphe nucleus
nTPM: 330.4
2220 Male, age 76, midline 330.4
Periaquaductal grey, anterior
nTPM: 324.5
1947 Male, age 18, unknown 333.5
1795 Male, age 51, unknown 321.1
2502 Female, age 75, unknown 318.9
Periaquaductal grey, dorsal
nTPM: 313.6
2850 Male, age 76, both hemispheres 339.7
1831 Male, age 72, unknown 318.6
1840 Male, age 53, unknown 309.7
2464 Female, age 72, unknown 286.4
Periaquaductal grey, lateral
nTPM: 334.7
2272 Male, age 74, both hemispheres 373.0
2053 Male, age 18, unknown 316.9
2140 Male, age 76, both hemispheres 314.2
Pretectal area
nTPM: 347.6
1816 Male, age 51, unknown 392.6
1817 Female, age 42, unknown 385.9
2007 Male, age 72, unknown 366.3
1815 Male, age 53, unknown 357.8
2273 Male, age 74, both hemispheres 355.6
1944 Female, age 72, unknown 353.0
2667 Female, age 75, unknown 351.3
2407 Male, age 75, both hemispheres 335.2
2316 Male, age 76, right hemisphere 319.6
2224 Female, age 72, unknown 307.9
2825 Male, age 18, unknown 298.2
Red nucleus
nTPM: 329.1
1821 Female, age 72, unknown 374.4
2503 Female, age 72, unknown 354.3
2725 Female, age 75, unknown 343.1
2785 Male, age 18, unknown 336.4
2584 Male, age 75, left hemisphere 333.4
1865 Male, age 51, unknown 328.1
2823 Male, age 76, right hemisphere 321.8
2769 Male, age 72, unknown 319.1
2588 Male, age 74, left hemisphere 314.4
2227 Male, age 72, unknown 312.2
1904 Male, age 53, unknown 308.5
1954 Female, age 42, unknown 303.8
Substantia nigra
nTPM: 363.2
1916 Female, age 42, unknown 410.3
1851 Male, age 51, unknown 393.8
2241 Male, age 72, unknown 381.0
2699 Male, age 18, unknown 373.4
2665 Male, age 74, both hemispheres 369.4
2409 Female, age 72, unknown 358.5
1889 Female, age 72, unknown 352.6
1941 Male, age 53, unknown 348.1
2590 Female, age 75, unknown 327.3
2583 Male, age 75, right hemisphere 317.7
Superior colliculus
nTPM: 328.1
2668 Female, age 75, unknown 348.5
2587 Male, age 74, left hemisphere 340.5
1913 Female, age 42, unknown 339.8
1796 Male, age 53, unknown 336.7
2261 Male, age 18, unknown 330.0
2087 Female, age 72, unknown 324.5
2664 Male, age 75, both hemispheres 320.5
1995 Male, age 72, unknown 317.7
1895 Male, age 76, right hemisphere 314.1
1839 Male, age 51, unknown 308.1
Ventral tegmental area
nTPM: 326.1
1915 Female, age 42, unknown 356.1
2223 Female, age 72, unknown 337.8
2410 Female, age 72, unknown 333.5
2218 Male, age 76, both hemispheres 327.3
1942 Male, age 51, unknown 302.9
2021 Male, age 53, unknown 299.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 207.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 207.0
Samples: 183

Max nTPM: 306.9
Min nTPM: 150.1
Std nTPM: 29.9
Median nTPM: 204.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 306.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 295.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 289.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 286.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 278.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 276.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 272.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 266.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 265.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 265.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 262.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1028.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1028.4
FF:10158-103A5 76 years, female 1028.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 323.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 275.7
Samples: 4

Max nTPM: 328.0
Min nTPM: 249.8
Sample A Female 328.0
Sample B Female 249.8
Sample C Male 260.8
Sample D Male 264.1
Midbrain
nTPM: 305.5
Samples: 4

Max nTPM: 409.7
Min nTPM: 257.8
Sample A Female 409.7
Sample B Female 276.7
Sample C Male 277.9
Sample D Male 257.8
Periaqueductal gray
nTPM: 275.1
Samples: 3

Max nTPM: 293.4
Min nTPM: 263.8
Sample B Female 268.1
Sample C Male 293.4
Sample D Male 263.8
Superior colliculi
nTPM: 323.7
Samples: 4

Max nTPM: 361.0
Min nTPM: 291.3
Sample A Female 361.0
Sample B Female 328.1
Sample C Male 314.4
Sample D Male 291.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 327.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 327.5
Samples: 4

Max nTPM: 336.4
Min nTPM: 320.3
Sample A Male 336.4
Sample B Male 320.3
Sample C Female 330.7
Sample D Female 322.6

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