BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.3 nTPM
HPA Brain:61.2 nTPM
GTEx:22.3 nTPM
FANTOM5:67.5 Scaled Tags Per Million
Macaque:16.7 nTPM
Mouse:17.1 nTPM
Rat:19.5 nTPM
Pig:44.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.7
2586 Male, age 75, left hemisphere 85.5
2828 Female, age 72, unknown 74.3
1870 Female, age 42, unknown 59.0
2666 Male, age 74, left hemisphere 52.7
2411 Female, age 72, unknown 51.6
1830 Male, age 51, unknown 49.7
1833 Male, age 53, unknown 49.3
1827 Male, age 72, unknown 47.2
2019 Male, age 18, unknown 45.3
2219 Male, age 76, both hemispheres 32.3
Dorsal raphe nucleus
nTPM: 59.0
2016 Female, age 72, unknown 67.3
1828 Male, age 53, unknown 63.2
2047 Male, age 72, unknown 57.6
2298 Female, age 72, unknown 57.5
2750 Male, age 76, both hemispheres 49.5
Inferior colliculus
nTPM: 48.1
1848 Female, age 42, unknown 53.1
1890 Male, age 53, unknown 50.0
2849 Male, age 72, unknown 44.6
2097 Female, age 72, unknown 44.4
Median raphe nucleus
nTPM: 41.6
2220 Male, age 76, midline 41.6
Periaquaductal grey, anterior
nTPM: 59.5
1795 Male, age 51, unknown 63.0
2502 Female, age 75, unknown 60.7
1947 Male, age 18, unknown 54.6
Periaquaductal grey, dorsal
nTPM: 54.6
2850 Male, age 76, both hemispheres 59.3
1840 Male, age 53, unknown 56.4
1831 Male, age 72, unknown 53.3
2464 Female, age 72, unknown 49.4
Periaquaductal grey, lateral
nTPM: 61.2
2053 Male, age 18, unknown 67.5
2140 Male, age 76, both hemispheres 67.2
2272 Male, age 74, both hemispheres 48.9
Pretectal area
nTPM: 49.2
2407 Male, age 75, both hemispheres 55.8
2825 Male, age 18, unknown 54.2
2273 Male, age 74, both hemispheres 53.7
2316 Male, age 76, right hemisphere 53.7
2667 Female, age 75, unknown 52.5
2224 Female, age 72, unknown 50.7
1817 Female, age 42, unknown 49.3
1815 Male, age 53, unknown 49.2
1816 Male, age 51, unknown 42.8
2007 Male, age 72, unknown 39.6
1944 Female, age 72, unknown 39.3
Red nucleus
nTPM: 57.8
2769 Male, age 72, unknown 67.6
2227 Male, age 72, unknown 66.4
1904 Male, age 53, unknown 61.8
1954 Female, age 42, unknown 61.8
2503 Female, age 72, unknown 61.4
1821 Female, age 72, unknown 59.2
1865 Male, age 51, unknown 56.7
2823 Male, age 76, right hemisphere 55.5
2584 Male, age 75, left hemisphere 53.1
2785 Male, age 18, unknown 51.9
2725 Female, age 75, unknown 49.3
2588 Male, age 74, left hemisphere 48.7
Substantia nigra
nTPM: 53.6
2699 Male, age 18, unknown 69.8
1851 Male, age 51, unknown 62.4
2665 Male, age 74, both hemispheres 60.1
2583 Male, age 75, right hemisphere 57.0
2590 Female, age 75, unknown 55.2
1916 Female, age 42, unknown 54.5
2409 Female, age 72, unknown 48.9
1889 Female, age 72, unknown 44.5
1941 Male, age 53, unknown 42.6
2241 Male, age 72, unknown 41.1
Superior colliculus
nTPM: 54.5
1995 Male, age 72, unknown 77.7
2664 Male, age 75, both hemispheres 71.2
1913 Female, age 42, unknown 62.7
2668 Female, age 75, unknown 54.0
1839 Male, age 51, unknown 52.4
1796 Male, age 53, unknown 50.5
2587 Male, age 74, left hemisphere 48.1
2087 Female, age 72, unknown 47.2
2261 Male, age 18, unknown 45.8
1895 Male, age 76, right hemisphere 35.1
Ventral tegmental area
nTPM: 56.3
2021 Male, age 53, unknown 62.5
1915 Female, age 42, unknown 58.5
2410 Female, age 72, unknown 57.5
1942 Male, age 51, unknown 56.0
2223 Female, age 72, unknown 55.7
2218 Male, age 76, both hemispheres 47.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.3
Samples: 183

Max nTPM: 79.3
Min nTPM: 4.3
Std nTPM: 10.8
Median nTPM: 20.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 79.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 69.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 51.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 50.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 49.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 48.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 48.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 48.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 46.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 43.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 43.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 67.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.5
FF:10158-103A5 76 years, female 67.5

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 16.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 16.0
Samples: 1

Max nTPM: 16.0
Min nTPM: 16.0
Sample A 16.0
Midbrain
nTPM: 16.7
Samples: 1

Max nTPM: 16.7
Min nTPM: 16.7
Sample A 16.7
Superior colliculi
nTPM: 14.7
Samples: 1

Max nTPM: 14.7
Min nTPM: 14.7
Sample A 14.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.8
Samples: 3

Max nTPM: 47.2
Min nTPM: 40.1
Sample A Female 41.2
Sample B Female 47.2
Sample C Male 40.1
Midbrain
nTPM: 30.0
Samples: 3

Max nTPM: 34.3
Min nTPM: 26.8
Sample B Female 34.3
Sample C Male 28.9
Sample D Male 26.8
Periaqueductal gray
nTPM: 40.8
Samples: 3

Max nTPM: 45.3
Min nTPM: 38.4
Sample B Female 38.8
Sample C Male 45.3
Sample D Male 38.4
Superior colliculi
nTPM: 44.9
Samples: 4

Max nTPM: 67.5
Min nTPM: 32.7
Sample A Female 43.8
Sample B Female 67.5
Sample C Male 32.7
Sample D Male 35.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.1
Samples: 4

Max nTPM: 19.0
Min nTPM: 16.2
Sample A 16.4
Sample B 19.0
Sample C 16.8
Sample D 16.2

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 19.5
Rat sample Sample description nTPM
Midbrain
nTPM: 19.5
Samples: 4

Max nTPM: 20.3
Min nTPM: 18.3
Sample A 19.4
Sample A 20.2
Sample A 20.3
Sample A 18.3

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