We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPS26
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPS26
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:427.4 nTPM
FANTOM5:16.3 Scaled Tags Per Million
Pig:1148.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043961
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

427.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 427.4
Samples: 300

Max nTPM: 1152.6
Min nTPM: 144.7
Std nTPM: 215.6
Median nTPM: 406.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1152.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1071.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1045.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1006.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 980.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 935.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 907.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 901.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 888.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 878.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 870.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 864.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 864.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 858.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 857.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 856.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 841.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 832.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 824.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 819.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 808.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 798.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 791.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 788.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 768.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 765.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 765.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 762.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 758.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 756.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 755.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 750.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 744.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 736.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 725.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 721.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 716.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 712.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 710.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 699.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 693.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 691.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 689.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 680.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 676.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 675.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 674.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 672.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 667.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 661.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 659.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 651.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 650.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 639.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 639.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 637.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 630.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 629.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 624.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 624.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 619.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 610.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 607.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 606.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 600.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 588.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 583.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 579.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 576.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 571.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 559.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 557.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 553.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 553.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 551.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 547.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 542.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 536.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 531.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 527.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 526.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 523.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 521.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 519.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 512.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 512.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 510.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 506.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 505.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 504.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 503.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 501.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 496.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 492.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 491.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 491.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 491.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 488.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 486.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 481.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 480.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 474.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 474.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 474.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 474.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 474.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 473.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 472.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 472.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 466.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 461.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 460.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 459.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 459.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 455.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 454.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 453.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 450.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 449.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 448.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 445.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 442.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 442.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 441.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 440.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 438.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 438.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 435.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 434.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 433.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 433.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 433.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 432.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 430.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 430.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 429.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 427.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 426.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 425.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 425.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 424.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 423.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 420.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 419.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 419.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 418.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 418.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 416.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 410.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 408.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 405.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 398.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 396.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 393.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 392.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 390.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 389.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 384.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 379.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 378.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 376.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 374.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 370.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 370.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 370.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 369.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 366.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 364.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 362.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 361.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 360.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 359.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 358.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 356.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 354.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 353.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 351.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 350.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 350.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 349.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 348.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 343.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 339.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 336.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 329.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 321.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 317.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 315.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 311.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 310.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 306.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 306.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 301.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 291.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 284.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 278.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 277.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 277.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 276.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 272.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 268.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 266.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 265.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 264.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 264.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 262.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 262.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 261.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 261.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 260.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 259.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 254.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 251.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 251.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 248.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 247.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 245.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 242.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 242.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 240.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 238.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 238.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 237.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 235.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 234.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 233.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 233.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 231.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 231.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 230.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 230.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 227.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 227.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 225.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 225.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 224.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 224.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 221.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 221.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 219.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 218.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 217.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 216.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 216.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 216.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 211.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 210.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 209.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 209.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 209.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 208.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 206.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 203.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 203.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 201.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 200.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 198.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 196.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 193.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 192.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 190.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 190.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 190.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 188.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 186.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 186.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 186.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 186.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 186.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 185.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 185.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 184.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 184.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 183.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 182.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 181.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 181.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 180.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 179.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 178.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 178.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 177.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 177.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 177.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 176.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 176.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 176.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 175.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 166.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 164.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 160.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 160.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 160.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 158.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 158.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 156.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 152.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 148.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 148.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 144.7
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

16.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.3
FF:10164-103B2 76 years, female 16.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1148.5
Pig sample Sample description nTPM
Caudate
nTPM: 1148.5
Samples: 4

Max nTPM: 1197.2
Min nTPM: 1040.6
Sample A Female 1197.2
Sample B Female 1187.9
Sample C Male 1168.2
Sample D Male 1040.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo